Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30420 320 / 2e-107 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G28040 264 / 8e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) AT1G75500 200 / 1e-60 WAT1 Walls Are Thin 1 (.1.2) AT3G18200 193 / 3e-58 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT2G39510 189 / 2e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 180 / 5e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 180 / 1e-52 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G53210 172 / 3e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 170 / 3e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G21890 168 / 2e-48 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G177700 [exp] 367 / 4e-126 AT4G30420 353 / 1e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G177600 [exp] 348 / 1e-118 AT4G30420 375 / 4e-129 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.018G099500 [exp] 348 / 1e-118 AT4G30420 402 / 7e-140 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 219 / 2e-68 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G040200 [exp] 210 / 8e-65 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 209 / 4e-64 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G068300 [exp] 205 / 1e-62 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.008G165600 [exp] 204 / 3e-62 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G209200 [exp] 202 / 3e-61 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019970 [exp] 321 / 5e-108 AT4G30420 351 / 5e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10023211 [exp] 300 / 1e-99 AT4G30420 378 / 1e-130 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10019969 [exp] 283 / 2e-93 AT4G28040 334 / 8e-114 nodulin MtN21 /EamA-like transporter family protein (.1.2.3.4.5) Lus10027251 [exp] 209 / 1e-63 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 207 / 2e-63 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10041634 [exp] 194 / 1e-57 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 192 / 2e-57 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 190 / 2e-56 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 190 / 2e-56 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024301 [exp] 189 / 8e-56 AT1G75500 575 / 0.0 Walls Are Thin 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.006G177800.2 pacid=42767025 polypeptide=Potri.006G177800.2.p locus=Potri.006G177800 ID=Potri.006G177800.2.v4.1 annot-version=v4.1 ATGAATGTGATAGATAGTTACAAGCCTGTGATGGCTATGATGGGAGTACAGGTTCTTGAAGCAGGAGTAGCTATTTTTTCTGAAGCAGCAATTTCACGAG GATTAAGTCCTGAAATCCTGTCAGTCTACAGGCAGGTCATTGCAGCGTTGGTCATAGCACCAATGGCTTATTTCTCGAGAAGGAGAGCGTCCAGTACAAT TTCTCTGGGACTAAAGGAATTTGTATTGTTATATATAGCTGCTTTGCTTGGCCCAACAATCAACTCAATTGCCTTCTTTGAAGGCATCTCCTTATCTTCT TCAACAATGTCAAGCACAATGTCTAATATAGTTCCTGGACTCACTTTTGTATTTACAGCAGCTATAGGAATGGAGAAAGTTAATATCCGCAGCTTGAGAA GCAACGCAAAGATAATAGGGACAGTTATCAGTGTTAGTGGAGCCATGTCCATGGCATTGCTCAAAGGGCCAAAACTACTTAACGCAGGAATCGTAGCAAC AAAATCTTCCAGTGGCTCTAGTGGTGAGACTTGGTTGCTGGGTTCACTAATCCTTTTTGGAAACAGTTGTTGCTGGGCAATTTGGACCATCATGCAGGTC CCAATATCAGCAAGATGTCCTGATCCTTTACTCTCTACTGCTTGGATGTGTTTCTTTGGATCCATACAAACAACAGCAGTTACCATCTTCTTAAAGACAG ATCCACAAGCATGGAAACCACATTCAAATCTTGAGTATGCTTGTTTACTCTACGTAGGGATTGCTTCTGCAAGCATCATTATTCTTCAAGCCTGGTGCAT TGCACGAAGGGGTCCGCTCTTCTCAGCAATGTTCAGCCCCCTATCTACTGTTATTGTTACCACCTTAGCTGCTATATTTCAACATGAAATGGTTTACACG GCAAGCTTGTTAGGCGCTATTGCTGTGATTGCTGGTTTGTACATGGTGCTGTGGGGTAAAGCTGAAGACCAGAGGGAGATCAGACAAGTGACAAATTTTA TGCCACAAGTTGACCAGAGAAGTATTCAGCAAGGTTCTATAGATGAATCTTCAGGAAAGAACGTCTGCAAAATAAATTTGGAAAAGCCACTTCTACCTGA CAAATTCTCTAGTGTCGACAAAGTTGATGAACCTGAATGA
AA sequence Show only first row Show all	>Potri.006G177800.2 pacid=42767025 polypeptide=Potri.006G177800.2.p locus=Potri.006G177800 ID=Potri.006G177800.2.v4.1 annot-version=v4.1 MNVIDSYKPVMAMMGVQVLEAGVAIFSEAAISRGLSPEILSVYRQVIAALVIAPMAYFSRRRASSTISLGLKEFVLLYIAALLGPTINSIAFFEGISLSS STMSSTMSNIVPGLTFVFTAAIGMEKVNIRSLRSNAKIIGTVISVSGAMSMALLKGPKLLNAGIVATKSSSGSSGETWLLGSLILFGNSCCWAIWTIMQV PISARCPDPLLSTAWMCFFGSIQTTAVTIFLKTDPQAWKPHSNLEYACLLYVGIASASIIILQAWCIARRGPLFSAMFSPLSTVIVTTLAAIFQHEMVYT ASLLGAIAVIAGLYMVLWGKAEDQREIRQVTNFMPQVDQRSIQQGSIDESSGKNVCKINLEKPLLPDKFSSVDKVDEPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177800 [exp]	0	1
					Potri.015G004900 [exp]	1.00	0.9989
AT3G07300			NagB/RpiA/CoA transferase-like...		Potri.010G068600 [exp]	1.41	0.9953
AT3G03680			C2 calcium/lipid-binding plant...		Potri.008G130550 [exp]	1.73	0.9945
AT1G78520			Carbohydrate-binding X8 domain...		Potri.011G101451 [exp]	11.61	0.9807
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.009G138600 [exp]	12.24	0.9929
					Potri.007G040950 [exp]	14.89	0.9919
					Potri.008G135001 [exp]	16.09	0.9911
AT5G03990			unknown protein		Potri.006G262800 [exp]	18.84	0.9711
AT1G30870			Peroxidase superfamily protein...		Potri.010G175100 [exp]	21.44	0.9891
					Potri.009G020201 [exp]	22.24	0.9888

Compare expression of checked genes

Potri.006G177800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.