Plant FIBer expression Database

Potri.006G178100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61920 156 / 3e-46 unknown protein
AT1G67170 154 / 2e-44 unknown protein
AT3G14750 139 / 8e-39 unknown protein
AT1G55170 115 / 4e-30 unknown protein
AT2G30120 83 / 3e-18 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G109700
[exp]
164 / 7e-47 AT1G67170 282 / 3e-91 unknown protein
Potri.018G100100
[exp]
144 / 7e-43 ND /
Potri.003G037900
[exp]
137 / 7e-39 AT1G55170 259 / 2e-86 unknown protein
Potri.001G382700
[exp]
127 / 1e-34 AT3G14750 297 / 6e-100 unknown protein
Potri.009G076700
[exp]
101 / 8e-25 AT3G14750 173 / 8e-52 unknown protein
Potri.001G281400
[exp]
94 / 2e-22 AT2G30120 161 / 4e-48 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019966
[exp]
252 / 3e-83 AT1G67170 137 / 3e-38 unknown protein
Lus10015495
[exp]
229 / 4e-74 AT1G67170 139 / 1e-38 unknown protein
Lus10035371
[exp]
161 / 5e-48 AT1G67170 284 / 2e-95 unknown protein
Lus10030976
[exp]
160 / 4e-46 AT1G67170 294 / 1e-96 unknown protein
Lus10013698
[exp]
157 / 1e-45 AT3G14750 298 / 3e-100 unknown protein
Lus10005563
[exp]
156 / 3e-45 AT3G14750 288 / 2e-96 unknown protein
Lus10038143
[exp]
145 / 2e-41 AT3G14750 275 / 1e-91 unknown protein
Lus10015629
[exp]
122 / 1e-32 AT1G55170 236 / 2e-77 unknown protein
Lus10037647
[exp]
120 / 4e-32 AT1G55170 233 / 6e-76 unknown protein
Lus10015628
[exp]
114 / 2e-30 AT1G55170 211 / 3e-68 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G178100.1 pacid=42770414 polypeptide=Potri.006G178100.1.p locus=Potri.006G178100 ID=Potri.006G178100.1.v4.1 annot-version=v4.1
ATGTCTGCAAGAAGGCATATTCGACCAACTTTAGAAGGGCGTGTTATCCAAGCACCTGGGATGATGCGTCATGGTCCATTTCCTGCTGGCCACCATACAT
CAGAGCCACTCTCTCGTTCTGATCTTCTAGAGCATAGGTTTGCTGCTCAGGCTGCGGACATTGAACAACTTGCAGGAGATAATAATAGACTGGTTACTAG
TCACATGGCCTTGAGGGAGGACCTTGCTGCTGCTCAGCAGGAAGTGCAAAGACTCAAGGCACATATTAGAAGCATCCAGACTGAAAGTGATATCCAGATC
AGGGTTTTGCTGGATAAAATTGCAAAAATGGAAAAAGACATCAGGGCTGGTGAGAACGTGAAAAAGGACCTCAAACAGGCACATGTGGAGGCACAGAACT
TGGTCAAAGAAAGACAAGAGCTTGCTACACAAATCCAACAGGCTTCACACGAGTTGCAGAAAATCCACACTGATGTAAAGAGTATACCAGATCTGCATGC
TGAGCTTGAGAATTCAAGGCATGAACTCAAGAGGTTAAGAGCTACATTCGAGTACGAAAAAGGATTAAATATAGAGAAGGTGGAGCAAATGCGAGCAATG
GAACAGAATCTCATAGGGATGGCAAGAGAAATGGAAAATTTGCGCGTTGATGTCTTGAATGCTGAGACCAGAGCACGTGCTCCAAACCAATATATTGGTG
GCTACGCAAATCCTGATGGATATGGGAGGCCTTTTGTTCACATGGGTGTTGGACCAGCAGGGGAAGGGATAATTCCTTACAACAGTAGCAACAGTGTAGT
GTCCAATGTTGGGTTTGGTGGTGCAGCAATGTCTACTACTGGTGGTGTCGCTCAATGGGTAGGGCCTTTTGATCCGTCGCATGCTCGGGGGTGA
AA sequence
>Potri.006G178100.1 pacid=42770414 polypeptide=Potri.006G178100.1.p locus=Potri.006G178100 ID=Potri.006G178100.1.v4.1 annot-version=v4.1
MSARRHIRPTLEGRVIQAPGMMRHGPFPAGHHTSEPLSRSDLLEHRFAAQAADIEQLAGDNNRLVTSHMALREDLAAAQQEVQRLKAHIRSIQTESDIQI
RVLLDKIAKMEKDIRAGENVKKDLKQAHVEAQNLVKERQELATQIQQASHELQKIHTDVKSIPDLHAELENSRHELKRLRATFEYEKGLNIEKVEQMRAM
EQNLIGMAREMENLRVDVLNAETRARAPNQYIGGYANPDGYGRPFVHMGVGPAGEGIIPYNSSNSVVSNVGFGGAAMSTTGGVAQWVGPFDPSHARG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G61920 unknown protein Potri.006G178100
[exp]
0 1
AT3G02700 NC domain-containing protein-r... Potri.017G142300
[exp]
3.16 0.8200
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.004G062500
[exp]
8.48 0.8086
AT2G21620 RD2 Adenine nucleotide alpha hydro... Potri.004G156200
[exp]
11.48 0.8278 Pt-RD2.2
AT5G66930 unknown protein Potri.007G037800
[exp]
19.59 0.7154
AT2G30080 ATZIP6, ZIP6 ZIP metal ion transporter fami... Potri.001G279300
[exp]
22.04 0.7846 ZIP6.3
AT3G51730 saposin B domain-containing pr... Potri.016G133400
[exp]
27.27 0.7829
AT3G13340 Transducin/WD40 repeat-like su... Potri.011G168600
[exp]
31.98 0.7256
Potri.001G323200
[exp]
33.80 0.7779
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.011G071900
[exp]
36.87 0.7289
AT5G45290 RING/U-box superfamily protein... Potri.018G114700
[exp]
42.05 0.7347

Potri.006G178100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.