Plant FIBer expression Database

Potri.006G178200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30460 39 / 0.0002 glycine-rich protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G100300
[exp]
45 / 1e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G178200.1 pacid=42767859 polypeptide=Potri.006G178200.1.p locus=Potri.006G178200 ID=Potri.006G178200.1.v4.1 annot-version=v4.1
ATGGGCAATTTGAAGTGTTTAGCAATTATTGTTCTCCTTGTTGCAACTTCGGCTGTGAGTGAAAGCCGGGTTGCGAGAAAAGACTTGGGCCTGGACCTTG
GAGGGCTAGGGGTAGGGCTGGGTGTTGGAGTGGGTATAGGGCTGGGTGGTGGTGGATCAGGCTCTGGTGCTGGAGCGGGTTCGGGTTCGGGTTCTAGGTC
TGGGTCTAGTTCAAGTTCAAGCTCATCTTCTTCTTCGTCAAGTTCTAGCTCCGGGTCGGGTGGTGGTTCTGGTGCTGGGTCAGAAGCTGGTTCATATGCT
GGTTCTAGGGCTGGCTCCGGGTCGGGTGGTGGTTCTGGTGCTGGGTCAGAAGCTGGTTCATATGCTGGTTCTAGGGCTAGCTCTGGTTCAAGAAACGGTC
GGGGTTAA
AA sequence
>Potri.006G178200.1 pacid=42767859 polypeptide=Potri.006G178200.1.p locus=Potri.006G178200 ID=Potri.006G178200.1.v4.1 annot-version=v4.1
MGNLKCLAIIVLLVATSAVSESRVARKDLGLDLGGLGVGLGVGVGIGLGGGGSGSGAGAGSGSGSRSGSSSSSSSSSSSSSSSSGSGGGSGAGSEAGSYA
GSRAGSGSGGGSGAGSEAGSYAGSRASSGSRNGRG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30460 glycine-rich protein (.1) Potri.006G178200
[exp]
0 1
AT3G57270 BG1 "beta-1,3-glucanase 1", beta-1... Potri.016G057400
[exp]
1.41 0.9936
AT5G10770 Eukaryotic aspartyl protease f... Potri.018G014900
[exp]
3.16 0.9782
Potri.008G028050
[exp]
3.16 0.9663
AT2G18660 AtPNP-A, PNP-A,... plant natriuretic peptide A (.... Potri.006G179300
[exp]
3.46 0.9911
AT3G28960 Transmembrane amino acid trans... Potri.008G086500
[exp]
3.74 0.9761
AT5G24090 ATCHIA chitinase A (.1) Potri.002G165700
[exp]
4.00 0.9796 CHI3.11
AT3G56630 CYP94D2 "cytochrome P450, family 94, s... Potri.016G031850
[exp]
4.00 0.9689
AT5G10770 Eukaryotic aspartyl protease f... Potri.018G014700
[exp]
4.24 0.9683
Potri.008G028200
[exp]
12.96 0.9283
AT1G18350 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND ... Potri.010G049500
[exp]
13.41 0.9325

Potri.006G178200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.