Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30440 758 / 0 GAE1 UDP-D-glucuronate 4-epimerase 1 (.1) AT1G02000 566 / 0 GAE2 UDP-D-glucuronate 4-epimerase 2 (.1) AT4G00110 563 / 0 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1) AT2G45310 560 / 0 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1) AT3G23820 528 / 0 GAE6 UDP-D-glucuronate 4-epimerase 6 (.1) AT4G12250 518 / 0 GAE5 UDP-D-glucuronate 4-epimerase 5 (.1) AT4G23920 102 / 5e-24 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G30620 96 / 3e-21 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G10960 90 / 1e-19 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT5G44480 89 / 3e-19 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100400 [exp] 789 / 0 AT4G30440 771 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Potri.002G146500 [exp] 574 / 0 AT1G02000 724 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.014G068400 [exp] 573 / 0 AT1G02000 714 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.017G059100 [exp] 548 / 0 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 547 / 0 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 503 / 2e-177 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1) Potri.012G128200 [exp] 499 / 2e-176 AT1G02000 544 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1) Potri.002G116750 [exp] 166 / 4e-50 AT2G45310 209 / 6e-67 UDP-D-glucuronate 4-epimerase 4 (.1) Potri.011G156100 [exp] 100 / 1e-22 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008893 [exp] 759 / 0 AT4G30440 767 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10015496 [exp] 746 / 0 AT4G30440 764 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10019967 [exp] 665 / 0 AT4G30440 688 / 0.0 UDP-D-glucuronate 4-epimerase 1 (.1) Lus10000787 [exp] 569 / 0 AT4G00110 731 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10015876 [exp] 568 / 0 AT4G00110 751 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10030281 [exp] 565 / 0 AT4G00110 753 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10009288 [exp] 564 / 0 AT4G00110 704 / 0.0 UDP-D-glucuronate 4-epimerase 3 (.1) Lus10022552 [exp] 516 / 0 AT3G23820 742 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10016640 [exp] 515 / 0 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Lus10032391 [exp] 502 / 4e-177 AT1G02000 620 / 0.0 UDP-D-glucuronate 4-epimerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04321 [poplar] [flax] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G178500.1 pacid=42770304 polypeptide=Potri.006G178500.1.p locus=Potri.006G178500 ID=Potri.006G178500.1.v4.1 annot-version=v4.1 ATGCCAGCACTAGAGGATGAGCTATTCCCTTCAACACCTGGTAAGTTCAAGATCGATCGAGCCCACACCATGAATCGCCACTTCCACCGTTGCTTCGGTT CCACGAGCACCATGTTCTTGTGGGCACTTTTCTTGGTTGCTTTAACGGCGTCGTATTTGAGTTTCCAATCTTTTGTCTATACCGGTAGCCGGTATCTCAC CGCTTCTTGGGGTGGTATTCAGTGGGAGAAACAAATCCGCCATTCTGCCCAGATACACCGTTCTAACGGCATGTCTGTTCTTGTTACCGGAGCAGCCGGT TTCGTTGGAAGCCACGTTTCTTTAGCTCTCAAGAAACGCGGAGACGGCGTCGTCGGGATAGACAATTTTAACAACTACTACGACCCGTCGTTGAAGAGAG CCCGAAAATCTCTCCTTAACAACCAAGGGATTTTTATCGTCGAAGGAGATATAAACGACGCGCGGTTAATAGCTAAGCTTTTTGATACTGTGGCTTTCAC TCACGTTATGCATTTGGCGGCTCAAGCTGGAGTCAGATACGCCATGGAGAATCCACACTCTTACGTGCATTCTAATATAGCCGGCCTGGTCACTCTTCTT GAAGCTTGTAAATCGGCTTACCCTCAGCCGTCTGTCGTTTGGGCTTCATCAAGTTCTGTGTACGGTTTAAATGAAAATGTTCCTTTCTCTGAGTCTGATC GGACGGACCAGCCCGCTAGTCTTTATGCGGCTACAAAAAAGGCCGGTGAGGAAATTACTCATACCTACAATCATATTTACGGTCTGTCAATTACTGGTTT AAGGTTTTTTACTGTGTACGGTCCATGGGGAAGACCCGATATGGCTTACTTTTCTTTCACGAGAAACATTTTACAAGGGAAACCGATCACAGTTTATCGT GGCAAGGATCGGGCTGACTTGGCTCGGGATTTTACTTTTATTGATGATATTGTGAAAGGTTGTGTTGGGTCATTGGATACTTCGGGTAAAAGCACCGGAT CTGGTGGGAAGAAGCGGGGACCCGCTCCTTATCGGATCTTTAATTTGGGTAACACGTCTCCTGTTACGGTACCGACACTCGTGAGCTTACTGGAGAGGCA TTTGAAGGTTAAAGCGAAAAGAAATTTTGTGGATATGCCTGGAAACGGTGACGTACCGTTCACTCATGCGAATATTAGTTTGGCCCACAGAGAGCTTGGG TATAAACCGACTACTGATTTGGCAACCGGGTTGAAGAAGTTTGTTAAGTGGTATCTCTCTTACTACGGATATAATCATGGGAAAGCTGTAAATTAG
AA sequence Show only first row Show all	>Potri.006G178500.1 pacid=42770304 polypeptide=Potri.006G178500.1.p locus=Potri.006G178500 ID=Potri.006G178500.1.v4.1 annot-version=v4.1 MPALEDELFPSTPGKFKIDRAHTMNRHFHRCFGSTSTMFLWALFLVALTASYLSFQSFVYTGSRYLTASWGGIQWEKQIRHSAQIHRSNGMSVLVTGAAG FVGSHVSLALKKRGDGVVGIDNFNNYYDPSLKRARKSLLNNQGIFIVEGDINDARLIAKLFDTVAFTHVMHLAAQAGVRYAMENPHSYVHSNIAGLVTLL EACKSAYPQPSVVWASSSSVYGLNENVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYR GKDRADLARDFTFIDDIVKGCVGSLDTSGKSTGSGGKKRGPAPYRIFNLGNTSPVTVPTLVSLLERHLKVKAKRNFVDMPGNGDVPFTHANISLAHRELG YKPTTDLATGLKKFVKWYLSYYGYNHGKAVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.006G178500 [exp]	0	1
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.012G023100 [exp]	8.66	0.8089
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.001G451600 [exp]	9.64	0.7929
					Potri.006G233301 [exp]	14.07	0.8035
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.005G167900 [exp]	17.00	0.8497	Pt-SAH7.2
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Potri.002G124100 [exp]	20.12	0.8242
AT1G14540			Peroxidase superfamily protein...		Potri.008G022264 [exp]	22.91	0.8264
AT3G43810		CAM7	calmodulin 7 (.1)		Potri.006G026700 [exp]	25.69	0.7926	CAM6.2
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	26.49	0.8119
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.002G236200 [exp]	33.25	0.8109	Pt-XTR7.2
AT1G28395			unknown protein		Potri.004G048100 [exp]	39.33	0.8207

Compare expression of checked genes

Potri.006G178500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.