Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23820 305 / 2e-105 Metal-dependent phosphohydrolase (.1.2) AT1G26160 281 / 7e-96 Metal-dependent phosphohydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G111700 [exp] 278 / 1e-94 AT1G26160 352 / 9e-124 Metal-dependent phosphohydrolase (.1) Potri.010G133101 [exp] 71 / 3e-16 AT1G26160 82 / 8e-21 Metal-dependent phosphohydrolase (.1) Potri.010G133001 [exp] 71 / 9e-16 AT1G26160 84 / 2e-21 Metal-dependent phosphohydrolase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015497 [exp] 333 / 3e-116 AT2G23820 331 / 2e-115 Metal-dependent phosphohydrolase (.1.2) Lus10019968 [exp] 323 / 1e-112 AT2G23820 332 / 1e-115 Metal-dependent phosphohydrolase (.1.2) Lus10017897 [exp] 271 / 1e-91 AT1G26160 329 / 2e-114 Metal-dependent phosphohydrolase (.1) Lus10035072 [exp] 256 / 2e-85 AT1G26160 319 / 5e-110 Metal-dependent phosphohydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF01966 [poplar] [flax] HD HD domain
Representative CDS sequence Show only first row Show all	>Potri.006G178600.5 pacid=42767533 polypeptide=Potri.006G178600.5.p locus=Potri.006G178600 ID=Potri.006G178600.5.v4.1 annot-version=v4.1 ATGGGAAGTGGAAGCCGAAATTTACTCTGTAAATCATCATCATCCGCGCTACTCTTCCTCGCACCGTCTTTCACTTCAGCTCAACTCCGTTTCAATTCCT TCACTCCCTCCAAACTCCGCCGTATGGCCACTCAACCTTCCTCCTCTCCCTCTTCCCTCACCACAAACGACACCGCTTCTCCTTCTCCTTCGCCCTCTCC TTCCTCCACGATTGATTTTCTCTCTCTTTGTCACCGCCTCAAGACTACGAAGAGAGCAGGATGGGTAAAGAGGGGCATAAAAGGACCAGAGTCAATATCA GATCATATGTACAGAATGGGATTAATGGCTCTGATTGCTCCTGATATTCCCGGCATTGATCGTGACAAATGTATAAAAATGGCGATAGTTCATGATATCG CTGAGGCAATTGTTGGAGACATAACGCCCTCGGATGGGGTTCCGAAGGCTGAAAAAAGCAGAAAAGAGAGGGAAGCATTGGAGCATATGTGCAAATTGCT TGGCGCAGAGTCAAGAGCGAAGGAAATGAGTGAGTTGTGGAATGAGTACGAGGAGAATTCGACACCAGAAGCTAAAATTGTTAAGGATTTTGATAAGGTG GAGATGATCCTTCAAGCTTTAGAATATGAAAATGAGCAAGGGAAAGACTTGGAAGAATTTTTCCAGTCAACCGCTGGGAAGTTCCAGACTGAAGTGGGGA AAGCATGGGCCTTAGAGATAGCATCAAGAAGAAGGAAGGAACGCTAG
AA sequence Show only first row Show all	>Potri.006G178600.5 pacid=42767533 polypeptide=Potri.006G178600.5.p locus=Potri.006G178600 ID=Potri.006G178600.5.v4.1 annot-version=v4.1 MGSGSRNLLCKSSSSALLFLAPSFTSAQLRFNSFTPSKLRRMATQPSSSPSSLTTNDTASPSPSPSPSSTIDFLSLCHRLKTTKRAGWVKRGIKGPESIS DHMYRMGLMALIAPDIPGIDRDKCIKMAIVHDIAEAIVGDITPSDGVPKAEKSRKEREALEHMCKLLGAESRAKEMSELWNEYEENSTPEAKIVKDFDKV EMILQALEYENEQGKDLEEFFQSTAGKFQTEVGKAWALEIASRRRKER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23820			Metal-dependent phosphohydrola...		Potri.006G178600 [exp]	0	1
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.001G384600 [exp]	9.89	0.9576
AT1G07320		EMB2784, RPL4	EMBRYO DEFECTIVE 2784, ribosom...		Potri.006G221100 [exp]	17.26	0.9506
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	19.51	0.9489
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	23.91	0.9488
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Potri.009G065900 [exp]	28.19	0.9474
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Potri.019G057200 [exp]	29.88	0.9234
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	30.88	0.9470
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	31.85	0.9465	Pt-RPL12.6
AT5G54600			Translation protein SH3-like f...		Potri.001G415400 [exp]	35.09	0.9453
AT5G14910			Heavy metal transport/detoxifi...		Potri.001G350500 [exp]	39.23	0.9417

Compare expression of checked genes

Potri.006G178600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.