Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30470 417 / 6e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G23910 415 / 3e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G51410 152 / 1e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G14700 152 / 3e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G19440 149 / 1e-42 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09510 146 / 2e-41 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G58490 142 / 4e-40 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G02400 136 / 7e-38 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09480 129 / 1e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G09490 128 / 1e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100500 [exp] 525 / 0 AT2G23910 438 / 4e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G079500 [exp] 274 / 2e-91 AT2G23910 261 / 1e-86 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G093700 [exp] 266 / 3e-88 AT2G23910 264 / 1e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G140700 [exp] 265 / 8e-88 AT2G23910 265 / 4e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.017G110500 [exp] 159 / 3e-46 AT5G14700 228 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G349600 [exp] 159 / 5e-46 AT5G14700 372 / 3e-128 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G057600 [exp] 155 / 5e-45 AT5G19440 474 / 7e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G256400 [exp] 153 / 4e-44 AT5G19440 552 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.009G052000 [exp] 146 / 1e-41 AT1G51410 563 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006885 [exp] 439 / 2e-156 AT2G23910 417 / 8e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10003780 [exp] 422 / 1e-149 AT2G23910 414 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10020372 [exp] 243 / 1e-79 AT2G23910 226 / 6e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009549 [exp] 179 / 1e-54 AT2G23910 172 / 4e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009955 [exp] 159 / 2e-46 AT1G51410 548 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022239 [exp] 151 / 5e-43 AT5G14700 374 / 4e-129 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041651 [exp] 150 / 1e-42 AT1G15950 532 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10039595 [exp] 145 / 3e-41 AT5G19440 462 / 6e-165 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024068 [exp] 146 / 5e-40 AT1G15950 534 / 0.0 IRREGULAR XYLEM 4, cinnamoyl coa reductase 1 (.1.2) Lus10026385 [exp] 137 / 7e-38 AT5G58490 533 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.006G178700.5 pacid=42768529 polypeptide=Potri.006G178700.5.p locus=Potri.006G178700 ID=Potri.006G178700.5.v4.1 annot-version=v4.1 ATGGATATTGAAGAGCTACCCTCAGTTTGTGTTCTTGATGCCTCAACCTATGTGGGTTCTTGGATCCTCAAGGGGCTGTTGAGTAGAGGATACACGGTTC ATGCAGCCATACAAAAGAACAACGGAGAGACTGAGATAGAGAAGGAAATAAGGGGCTTGGGGAGAGAGGAGGAAAGATTGGTGGTATTTGAAGTCGATGT CTTGGATTACCATAGCATTCTAATTGCTTTGAAGGGTTGTTCTGCTATGTTCTGCTGCTTGGACAGTAGAGACGGCTACGATGAAAAAATGGTTGATTCG GAAATTAGAGGAGCAATCAATGTAGCGGAGGCTTGCGCACAGACCGATACCATTGAAAAGATTATATTCAGTTCTTCACTAACTGCAGCGATATGGAAAG AGAGCATTTGTTCAGAGAAGGATGTAGACGAGAGGTCTTGGAGTGATCAAGAATTTTGCAGGAAATTGAAGTTATGGCATGCCCTGGCAAAGACTCTCTC TGAACAGGCTGCTTGGGCTTTAGCCATGGACCGTATGCTTAACATGGTTTCCATTAATGCCGGCCTAGTTCTGGGTCCTGGTGTCTCTCAGCAGAACCCT TTATCAACCATGTCATACCTCAGAGGGGCAGCTCAAATGTATGAAAATGGGGTGCTGGCCTATGTAGATGTGAACTTCCTGGCTGATGTCCATATTCGAG CTTTCCAGGATCGGTCCACATGTGGCCGATACTTCTGCTTCAATCAGACGGTTACTACCGAGGAAGAAGCTGTCAAGCTTGCACAAAGCCTGAACCCTTT AATATCATTACCGCCAAGGTATGAATACCAAGGTAATGAAGTGCACGCTGAGAGGCTTAGAACAAAGAAGTTGAACAAGCTGGTCGAGGGTGCTGCATAG
AA sequence Show only first row Show all	>Potri.006G178700.5 pacid=42768529 polypeptide=Potri.006G178700.5.p locus=Potri.006G178700 ID=Potri.006G178700.5.v4.1 annot-version=v4.1 MDIEELPSVCVLDASTYVGSWILKGLLSRGYTVHAAIQKNNGETEIEKEIRGLGREEERLVVFEVDVLDYHSILIALKGCSAMFCCLDSRDGYDEKMVDS EIRGAINVAEACAQTDTIEKIIFSSSLTAAIWKESICSEKDVDERSWSDQEFCRKLKLWHALAKTLSEQAAWALAMDRMLNMVSINAGLVLGPGVSQQNP LSTMSYLRGAAQMYENGVLAYVDVNFLADVHIRAFQDRSTCGRYFCFNQTVTTEEEAVKLAQSLNPLISLPPRYEYQGNEVHAERLRTKKLNKLVEGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30470			NAD(P)-binding Rossmann-fold s...		Potri.006G178700 [exp]	0	1
AT5G61280			Remorin family protein (.1)		Potri.015G049700 [exp]	1.73	0.7992
AT1G22540			Major facilitator superfamily ...		Potri.013G107050 [exp]	3.46	0.7494
AT4G10500			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150200 [exp]	4.69	0.7575
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	5.09	0.7170
AT1G05630		AT5PTASE13, 5PT...	Endonuclease/exonuclease/phosp...		Potri.017G006900 [exp]	8.77	0.7365
AT5G20260			Exostosin family protein (.1)		Potri.006G064850 [exp]	14.07	0.7365
AT5G05270			Chalcone-flavanone isomerase f...		Potri.019G057800 [exp]	15.32	0.7379
AT1G12050			fumarylacetoacetase, putative ...		Potri.006G009200 [exp]	18.73	0.7292
AT5G42800		M318, TT3, DFR	dihydroflavonol 4-reductase (....		Potri.005G229500 [exp]	20.24	0.7225	Pt-DFR.1
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G006800 [exp]	28.91	0.6604

Compare expression of checked genes

Potri.006G178700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.