Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17890 564 / 0 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT1G73250 550 / 0 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT5G28840 94 / 2e-21 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G14790 71 / 2e-13 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G78570 68 / 2e-12 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT1G53500 66 / 9e-12 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT5G59290 59 / 2e-09 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT3G53520 58 / 3e-09 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT3G46440 54 / 6e-08 UXS5 UDP-XYL synthase 5 (.1.2) AT1G64440 54 / 6e-08 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G101700 [exp] 629 / 0 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.013G040600 [exp] 90 / 3e-20 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.005G053000 [exp] 89 / 1e-19 AT5G28840 720 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.006G272700 [exp] 70 / 5e-13 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 66 / 1e-11 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.011G103700 [exp] 66 / 1e-11 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.016G080500 [exp] 65 / 2e-11 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.006G214000 [exp] 62 / 1e-10 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.008G053100 [exp] 59 / 8e-10 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037102 [exp] 601 / 0 AT1G17890 565 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10036882 [exp] 593 / 0 AT1G17890 558 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10015915 [exp] 94 / 2e-21 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10020247 [exp] 94 / 2e-21 AT5G28840 719 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10009174 [exp] 93 / 3e-21 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10001777 [exp] 93 / 4e-21 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10010942 [exp] 72 / 1e-13 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 66 / 1e-11 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005560 [exp] 64 / 4e-11 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 64 / 4e-11 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.006G179100.1 pacid=42768268 polypeptide=Potri.006G179100.1.p locus=Potri.006G179100 ID=Potri.006G179100.1.v4.1 annot-version=v4.1 ATGGGCGACCCCACCCATGACTCCTCCGATTTCCTCACCGACAAATCGGCTAAAATCTTTGTGGCTGGACACCGCGGTCTAGTCGGCTCGGCAATCGTCC GTAAACTTCAATCCCTTGGCTTCACCAATCTTGTCCTGCGGTCCCACTCCGAGCTCGATCTCACTCGCCAATTTGATGTGGACTCCTTCTTTGCCGCCGA GAAGCCCCGATTTGTTATCCTAGCCGCTGCTAAAGTCGGCGGGATCCACGCTAACAATACGTACCCTGCCGATTTCATTGCTATAAATCTCCAGATCCAA ACTAATGTGATTGACTCCTCATTTCGCCACGGAGTTAAGAAATTTTTGTTTTTGGGATCTTCATGTATTTACCCAAAGTTAGCACCGCAGCCCATTCCTG AAAATGCACTGCTTACTGGGCCTTTAGAGCCTACGAATGAGTGGTACGCAATTGCGAAGATAGCTGGGATTAAGATGTGCCAGGCTTACAGGATTCAGTA TAGCTGGGATGCTATTTCTGGAATGCCGACCAACTTATATGGTCGGAATGATAATTTTCATCCGGAGAATTCTCATGTTTTGCCGGCATTGATGAGGAGG TTTCACGAGGCGAAGGTGAATAATGCGAAACAAGTGCTGGTCTGGGGAACTGGGAGTCCGTTGAGGGAGTTTTTGCATGTTGATGATTTGGCGGATGCGG TGGTGTTTTTGATGGACAAGTATAGTGGGTTGGAGCATTTAAATGTGGGCAGTGGGAAGGAGGTTACTATAAAGGATTTGGCAGAGTTGGTGAAGGAGGT TGTAGGGTTTGAAGGTGATCTTGTTTGGGATACATCAAAGCCAGATGGGACTCCGAGGAAGTTAATGGATAATTCTAAGTTGTTGGGGTTGGGTTGGACA CCGAAGATTTCACTTAAGGATGGGCTTGTTGATACTTATAAGTGGTATGTGGAGAATGTGGCGGGGCAATGA
AA sequence Show only first row Show all	>Potri.006G179100.1 pacid=42768268 polypeptide=Potri.006G179100.1.p locus=Potri.006G179100 ID=Potri.006G179100.1.v4.1 annot-version=v4.1 MGDPTHDSSDFLTDKSAKIFVAGHRGLVGSAIVRKLQSLGFTNLVLRSHSELDLTRQFDVDSFFAAEKPRFVILAAAKVGGIHANNTYPADFIAINLQIQ TNVIDSSFRHGVKKFLFLGSSCIYPKLAPQPIPENALLTGPLEPTNEWYAIAKIAGIKMCQAYRIQYSWDAISGMPTNLYGRNDNFHPENSHVLPALMRR FHEAKVNNAKQVLVWGTGSPLREFLHVDDLADAVVFLMDKYSGLEHLNVGSGKEVTIKDLAELVKEVVGFEGDLVWDTSKPDGTPRKLMDNSKLLGLGWT PKISLKDGLVDTYKWYVENVAGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Potri.006G179100 [exp]	0	1
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	3.74	0.7768
AT4G21740			unknown protein		Potri.011G095000 [exp]	6.08	0.7896
AT3G51160		GMD2, MUR_1, MU...	MURUS 1, GDP-D-MANNOSE-4,6-DEH...		Potri.007G013900 [exp]	7.07	0.7415	GMD1.1
AT5G64090			unknown protein		Potri.003G020500 [exp]	24.31	0.7765
AT1G06320			unknown protein		Potri.005G202500 [exp]	24.59	0.7371
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G229400 [exp]	27.92	0.6736
AT5G44860			unknown protein		Potri.012G125800 [exp]	37.61	0.7587
AT4G38040			Exostosin family protein (.1)		Potri.005G147500 [exp]	39.16	0.7268
AT1G07060			unknown protein		Potri.001G281500 [exp]	40.07	0.7097
AT5G26960			Galactose oxidase/kelch repeat...		Potri.001G271900 [exp]	45.82	0.6712

Compare expression of checked genes

Potri.006G179100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.