Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54010 348 / 4e-116 UDP-Glycosyltransferase superfamily protein (.1) AT4G27570 338 / 5e-112 UDP-Glycosyltransferase superfamily protein (.1) AT4G27560 331 / 3e-109 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 326 / 4e-107 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT5G53990 323 / 2e-106 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 322 / 3e-106 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 319 / 1e-104 UDP-Glycosyltransferase superfamily protein (.1.2) AT3G29630 318 / 2e-104 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 315 / 4e-103 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G061000 [exp] 392 / 5e-133 AT5G54010 468 / 6e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 361 / 4e-121 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G041900 [exp] 273 / 2e-87 AT5G54010 348 / 1e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 258 / 6e-81 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 244 / 1e-75 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 244 / 2e-75 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 236 / 2e-72 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 236 / 4e-72 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 234 / 9e-72 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003154 [exp] 652 / 0 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 334 / 2e-110 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 320 / 6e-105 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10002350 [exp] 309 / 2e-104 AT1G64910 179 / 2e-54 UDP-Glycosyltransferase superfamily protein (.1) Lus10004381 [exp] 315 / 5e-103 AT5G54060 437 / 1e-150 UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) Lus10040178 [exp] 310 / 7e-101 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1) Lus10025711 [exp] 245 / 6e-76 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 242 / 1e-74 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 233 / 4e-71 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 205 / 1e-60 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.006G179700.1 pacid=42769699 polypeptide=Potri.006G179700.1.p locus=Potri.006G179700 ID=Potri.006G179700.1.v4.1 annot-version=v4.1 ATGTCTAGTGAATCATCATCCGAGCTTCATGTTGTGATGTTTCCATTCTTTGCATTTGGTCACATATGCCCATTTGTGCAACTCTCTAACAAGCTTTCCC TCCATGGAGTTCGAATCTCTTTCTTGTCAGCTCCTGGTAACATTGCACGCATCAAGTCCTCTCTTCTTGCCACTCCCACCACCCAAATCATCTCTCTTCC AATCCCTGTGGTTGAGGGCCTCCCTCCGGGGCATAACAGCACCGCAGAGACAACACCGGCTGTGGCTGGTCTCCTCAAGAAAGCTCTAGACCTCATGCAG CCTCAAATCAAGACCATATTGGCAGAACTCAAACCCCATTTTGTGTTCTTCGATCTCTTACAGCACTGGCTTCCAAAGCTAGCTTCCCAGATTGGCATTA AAACAATAAGCTACACTGTTTTCTCTGCCACTTCAACTTCATACCTTACTGTCCCTGCCAGAATAGGTGAAGAAGGAGAAAGCCCCTCGATTGGGGATCT CATGAAACCTCCAAATGGGTATCCTTCATCATCCATTACTTCTGTAAAAGCCTTTCAGGCTCGAGACTTCTCGATTGTATATAAGAGCTTTGATGGTGGT CCTACTATATGCGATAGAGCTGTCGGTAGTCGTCTTGGTTGCACTGCAATGCTCTTGAAGACATGTCAAGAAATGGAAGGACCGTACGTGGATTTTATAA AAACACAGTTTAAAAAACCTGTACTTTTAACTGGTCCTCTAGTCCCTGATCCACCTTCTGGAGTACTCGATGAGAAATGGGCTAATTGGTTGGGTCAATT TCCTGCCAAATCTGTGATTTTTTGCTCATTTGGCAGCGAAACATTCTTGAACCATGACCAAATAAAAGAGCTTGTTCTTGGTTTGGAACTCACTGGTTTA CCATTTTTCCTTGTTTTGAACTTTCCTGCAGAGCTCGACAGCCAAACCGAGTTAAACCAGGCTTTACCATCGAGTTTCTTAGAGAGGGTCAAGGGGAGAG GAGTTCTGCACACAGGATGGGTTCAGCAACAGCTTATACTCGCACATAGTAGTGTAGGGTGTTATGTCTGTCACTCAGGGTTTAGCTCTCTGATTGAAGC ATTGGTGAATGACTGTCAATTGGCCATGCTACCACTGAAGGGTGACCAGTTCTTGAACACCAAGCTCATAGCTGGAGACCTGAAGGCTGGGGTGGAGATA AATAGGAGAGATGAGGATGGGTATTTTGGAAAGGATGATATTTGTGAAGCTGTCAAAACTGTCATGCTGGATGTAGACAAGGAGCCTGGCAAGTCTATGA GGGAAAATCACAAAAAATGGAGGGAATTTCTGTTGAACGCACAGATTCAGAACCAGTACATTGTAGAGTTGATTGAGGAACTGAAAGCCATGGCTTAG
AA sequence Show only first row Show all	>Potri.006G179700.1 pacid=42769699 polypeptide=Potri.006G179700.1.p locus=Potri.006G179700 ID=Potri.006G179700.1.v4.1 annot-version=v4.1 MSSESSSELHVVMFPFFAFGHICPFVQLSNKLSLHGVRISFLSAPGNIARIKSSLLATPTTQIISLPIPVVEGLPPGHNSTAETTPAVAGLLKKALDLMQ PQIKTILAELKPHFVFFDLLQHWLPKLASQIGIKTISYTVFSATSTSYLTVPARIGEEGESPSIGDLMKPPNGYPSSSITSVKAFQARDFSIVYKSFDGG PTICDRAVGSRLGCTAMLLKTCQEMEGPYVDFIKTQFKKPVLLTGPLVPDPPSGVLDEKWANWLGQFPAKSVIFCSFGSETFLNHDQIKELVLGLELTGL PFFLVLNFPAELDSQTELNQALPSSFLERVKGRGVLHTGWVQQQLILAHSSVGCYVCHSGFSSLIEALVNDCQLAMLPLKGDQFLNTKLIAGDLKAGVEI NRRDEDGYFGKDDICEAVKTVMLDVDKEPGKSMRENHKKWREFLLNAQIQNQYIVELIEELKAMA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	0	1
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	2.00	0.9990
AT5G39240			unknown protein		Potri.004G119600 [exp]	2.44	0.9972
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080300 [exp]	2.44	0.9952
AT4G33800			unknown protein		Potri.002G117600 [exp]	2.82	0.9969
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	3.16	0.9962
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117000 [exp]	4.58	0.9952
AT5G18060			SAUR-like auxin-responsive pro...		Potri.009G126300 [exp]	4.89	0.9952
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Potri.011G151800 [exp]	5.83	0.9867
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Potri.009G141100 [exp]	6.63	0.9835	SAUR55
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	7.93	0.9911

Compare expression of checked genes

Potri.006G179700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.