Potri.006G180100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28080 2109 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT1G01320 1382 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT1G15290 1254 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
AT3G52140 321 / 3e-89 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G102500 3121 / 0 AT4G28080 2144 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.003G031000 1418 / 0 AT1G15290 1522 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.014G098600 1396 / 0 AT1G01320 2036 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.002G170900 1367 / 0 AT1G01320 2033 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.001G271200 332 / 8e-93 AT3G52140 1842 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Potri.009G065300 332 / 1e-92 AT3G52140 1758 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035822 2347 / 0 AT4G28080 2117 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10036604 1524 / 0 AT4G28080 1357 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10004009 1376 / 0 AT1G01320 2014 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10030259 1305 / 0 AT1G01320 1731 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10037481 327 / 8e-91 AT3G52140 1894 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
Lus10015708 322 / 3e-89 AT3G52140 1874 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1), tetratricopeptide repeat (TPR)-containing protein (.2), tetratricopeptide repeat (TPR)-containing protein (.3), tetratricopeptide repeat (TPR)-containing protein (.4)
PFAM info
Representative CDS sequence
>Potri.006G180100.1 pacid=42768617 polypeptide=Potri.006G180100.1.p locus=Potri.006G180100 ID=Potri.006G180100.1.v4.1 annot-version=v4.1
ATGGCTCCCAAGACTGGAAAGGCCAAGCCTCATAAAGCTAAAGGAGAGAAAAAGAAGAAGGAAGAAAAAGTTTTGCCTACTGTCATAGAAGTCACCGTTG
AAACGCCGGACGATTCTCAAGTGTCTCTCAAGGGCATCTCCACGGACAGGATCTTGGATGTAAGAAAGCTTTTGGGTGTGCATGTCGAGACATGCCACTT
GACCAATTTCTCCTTATCTCACGAGGTACGGGGACCCAGACTCAAAGATTCAGTGGACATCATCTTGCTCAAACCCTGCCACCTCACCATTACAGAAGAG
GACTACACAGAAGAACAATCCATAGCTCACATCCACCGACTCCTCGACATCGTCGCCTGCACCACCTCATTTGGCGCCTCTTCCACTTCTCCGACAAAAA
CACCGGGTCGAACCGGAGGTTCAAAGGAGTCCGGTTCGACTGAGACGGGCGGAGATAACAAGAAAATCGTGAACAAGAGTGGCAAGGATGCTTGTACGGA
CGCGATGGAGAAAGCGGATGCGGCGGTTTCCATGTGCCCGCCGCCACGGCTTGGCCAGTTTTATGAATTCTTCTCTTTCTCGCACCTCACGCCGCCGGTT
CAATATATCAGGAGATCGAGTCGTCCTTTCCTTGAAGATAAAACGGAAGATGATTTCTTCCAGATAGACGTTAGGGTTTGCAGTGGGAAGCCAATGACAA
TTGTTGCTTCGCGGGAAGGATTCTATCCAGCTGGAAAACGCGCTCTTCTTTGTCGCTCTTTGGTTAGTTTGTTGCAGCAGATTAGCAGAGTTTTTGATTC
TGCATACAAAGCTCTTATGAAAGCTTTCACTGAGCATAATAAATTTGGTAACCTTCCTTATGGTTTTCGAGCGAACACGTGGGTTGTTCCACCGCTTGTT
GCTGATAATCCTTCTGTTTTTCCGCCACTTCCTGTGGAGGATGAGAATTGGGGAGGTAATGGAGGAGGACAAGGAAGAGATGGGAAACATGATTACAGGC
CATGGGCGAAGGAGTTTGCGATTTTGGCAACAATGCCTTGTAAAACAGCAGAAGAGAGGCAAATTCGGGACCGGAAAGCCTTTCTGCTTCATAGTTTATT
TGTCGATGTTTCTGTTTTTAAAGCTGTTGCAGCAATCAAAAGTATCATTGAAAATCAGTGCTTTTTAAGTGATACTGTGAAGTCGTTTTTGCATGAGGAA
AGAGTTGGAGATTTGATTATTATCATTACGAGAGATGTGTCAGATGCTAGCACCAAGTTGGATTGTAAAAATGATGGGTGCCAGGTTCTTGGAGTGTCAC
AGGAAGAACTTGCTCGGAGAAATTTACTAAAGGGAATAACTGCTGATGAAAGTGCAACTGTTCATGATACTCCCACTTTAGGTGTAGTGGTTGTTCGACA
TTGTGGCTTCACAGCTGTTGTTAAAGCTTCTTCTGAGGTGAACTGGGAAGGGGATCCTATTCCCCAGGACATTTCCATTGAGGAACACCCTGAAGGAGGC
GCCAATGCTTTAAATGTTAATAGCTTGAGGATGCTATTGCATAAGTCATCGACGCCCCAGTCATCTAATACACTCCAGCGACTACAAGGTGGAGATCTCG
AAATTTTACACTCTGCCAGGTCTTTGGTGAGGAAAATACTAGAGGATAGTTTGTTGAAGCTACAGGAAGAATCCAGTAGATACACGAAATCTATCAGATG
GGAGCTAGGAGCATGTTGGGTTCAACATTTGCAAAATCAGGCTGCGGGGAAAACTGAGGCTAAGAAAAATGAAGAAACTAATCCTGAGCCTGCTGTCAAG
GGGCTTGGAAAGCAAGGTGCATTGTTAAGGGAGATAAAGAAGAAAACTGATGTCAAAACCGGCAAAACTGAAGAGGGAAAGGATGTTTATGCTGGTAACA
ACCTTGACATGAGCAAGAAACCTGATAGCACTAATCAGGAAGAAATGGAGAAAAAAGATGAGGAAATGAAAGTAATATGGAAAAAGCTGCTTCCTGAAGC
AGCATATCTGCGACTTAGAGAATCAGAAACCGGTCTTCACCTCAAGACACCTGATGAGTTGATTGAAATGGCATATAAATACTATGCTGACACTGCTCTT
CCAAAACTGGTGGCAGATTTTGGCTCCCTGGAACTTTCACCAGTTGATGGAAGAACATTGACAGATTTTATGCATACACGGGGTTTGCAGATGTGTTCTT
TGGGGCGTGTGGTTGAACTTGCAGACAAGCTCCCTCACGTGCAATCACTATGTATACATGAAATGATTGTCCGAGCCTACAAGCACATTTTACAAGCTGT
TGTGGCATCAGTTAATGACGTTGCTGACTTGGCTGCTTGCATTGCATCATGTCTAAATATGTTGTTAGGAACGCCTTCAACTGAAACTGAGGACTCGGAT
ATCATAAATGATGAGAAACTAAAGTGTAAGTGGGTGGAAACATTCGTTGGAAAGAGGTTTGGGTGGCAGTGGAAGCATGAGAGCTACCAGGATCTAAGAA
AGTTTGCCATTCTTCGTGGACTGTCCCACAAGGTTGGCCTTGAGCTTCTTCCCAGGGACTATGATATGGACAATGCTTTTCCTTTCAAGAGGTCTGATAT
TATAAGCATGGTCCCTGTATACAAGCATGTTGCATGTTCATCTGCGGATGGACGTACCCTGCTAGAATCATCCAAAACTTCCTTAGATAAAGGTAAATTG
GAGGATGCTGTAAACTATGGAACTAAGGCACTGTCAAAACTCGTGTCAGTCTGTGGCCCTTACCATCGAATGACTGCGGGAGCATACAGTCTTCTGGCTG
TAGTACTCTACCATACTGGGGATTTTAATCAGGCTACCATTTATCAACAAAAAGCATTGGATATTAATGAGAGGGAGCTTGGACTTGATCATCCTGATAC
AATGAAAAGTTACGGGGATCTAGCTGTCTTCTACTATCGTCTTCAACATACGGAATTGGCCTTGAAGTATGTCAATCGTGCACTGTATCTTTTGCATCTA
ACGTGCGGGCCATCTCATCCAAATACTGCTGCGACGTATATCAATGTAGCAATGATGGAAGAAGGATTAGGGAACGTGCATGTTGCTCTGAGGTACCTTC
ACGAGGCTCTAAAGTGTAACCAGAGACTTCTTGGAGCGGATCATATACAGACTGCTGCCAGCTACCATGCCATAGCAATTGCTCTGTCATTGATGGAAGT
TTACTCCTTAAGTGTTCAGCATGAACAGACTACTCTGCAAATACTGCAGGCCAAACTTGGACCTGAGGATCTACGCACTCAGGATGCAGCTGCATGGCTT
GAATATTTTGAGTCAAAGGCTCTGGAGCAGCAAGAAGCTGCGCGCAACGGTACTCCAAAGCCAGATGCCTCGATCTCCAGTAAAGGTCATTTAAGTGTAT
CAGATCTTTTGGATTATATAACACCAGATGCAGATATGAAAGCAAGAGAAGCACAAAAGAAAGCTCGTGCAAAGGTTAAAGGCAAACCAGGCCAAAATGG
GGAGACAGTCTCAGATGAATACCAAAAGGATGAAATATTGTCACCAACTTATCCTATTGTAGAAAATTCAAGTGACAAGGAAAACAAATCTGAAACTCAA
TTTGCAGAGCCTGGGAATGAAAAATCTGATTCTGGTCTTCCAGATCAGTCATTGTTGAAGACTGATGATAAGACCCAAGAGGAAGACTCAGATGAAGGAT
GGCAAGAAGCTGTTCCTAAAGGTCGTTCACCGACAAGTCGCAAATCTTCTGGTTCAAGGAGGCCAAGCCTAGCCAAATTGAATACCAACTTCATGAATTT
ACCCCAGTCATCAAGATTCCGAGGAAAGCCTAACAATTTTGCATCCCCTAAAACATCACCGAATGATCCTGCTGCTTCCACTGGACTGACAGTTCCTGTT
CCTAAAAAGTTTGCCAAGAGTGCCAGCTTCAGTACAAAAGTAAATAACTCTGGTGCCTCTACTGGTGGAGCAGAGAAATCAAGTACCCCTAAATCAGCCC
CAGCTACCCCTGCCTCAACTGAACAAGTTGCCAAAGCAGCCCCAACAGCAAGTCCAATCAGCGTTCAGTCAGCTGGAAAAATCTTTTCCTATAAAGAAGT
TGCTTTGGCTCCTCCTGGGACAATTGTGAAGGCAGTAGCAGAACAGTTGCCGAAAGGAAATCTTCCAATGGAACCAAGTACTCAGGGTAGCAATGAGGCA
TCTGCAACTGATGTCACATCAGGAGAGGTGACAACATTAAAAGCTGCAGAGGTAGACAACTTTCTGAAACCTGAAGCAGTGAAACATCTTCCGGCTTCAG
AGGGAATGAAAAGTCCTGTCGATCAAAAGAAAGAAACAGAAGAAGGGGGTTTGGTGGCGACAGAGCAACTCGAAGGAAAGAAGTCTGCTGTTGAGGATCG
CACTGATAAAGAAGACAATGGTGCTGAAATTAAAATAGTTGCTGTTAAAGTTAATACCTCAGAAGCTGGAAACATTTCATTCTTGGGTAATGAGAATTTG
GATACTTCCAAGGATTCAAATACCATCTCTTCCCCAACTGAAGTGCCAGAAACACAAGTATCAGACGGTTTCCCAGCAGCTTCCCCTGATATGGAACCTC
AATCTACTTCAACTGAAAATTCTGGTTTGATGGAAAAAGATGCTTCAATCTCAAATGAAGGGGTAGAAGATGAGAATACTCTGGATCCATCTAGTGACAA
TACAAATGCTAAGGCATTGTCGACTGAAGGAGGAAAGCAAGATGAAACAGAAACTGGCAAGGAGACAGCCAAGAAACTTTCTGCAGCTGCACCACCATTT
AACCCATCCATAATAATTCCAGTTTTTGGCTCAGTTACCATTCCAGGATTCAAAGATCATGGAGGACTTCTTCCTTCACCAGTGAATATTCCTCCAATGC
TTACTGTCAATCCTGTTCGCAGATCACCTCATCAGTCAGCAACAGCTAGGGTTCCATATGGTCCGAGGCTGTCTGGTGGTTTTAACAGATCTGGAAATCG
CGTTCCACGTAACAAGCCGAGCTTCAACAATGGTGAGCATACAGGGGATGGGAATCATTTCAGCCCTCCTAGAATAATGAACCCACATGCAGCTGAATTT
GTGCCTGGCCAACCTTGGGTTCCCGATGGCTATTCAATACTGCAAAATGGTTATATGGCTACCACGAATGGTATGCCAGTATCTCCAAATGGCTTCCCCA
TTTCCCCAACCGGTATTCCTGTGTCACCAAATGGTTATCCAGCATTATTGAACGGTATTCAAGCAACTCAAAATGAGTTTCCAGCCTCTCCAGTCAGTTC
AGTAGAAAGACCCATGTTAGTTTCTGTTGATGTTCGTGTTGAAAACAAGAGTGAAGCTGAAGCAGAGAATGGTGTTGAAACTTCTGCAATTGAAGTAGGA
GTTGAAGACCAGTCAGGTGAGAAAGAACATCAAGAAGAAGATGTAAATCCCGAAATAAAAGAAAATCCTGCCGAGCTCCCAGAGACCAGTGATACTGTTG
TAGCAATAGAAACTTGTGATAGCTTGCCAATTGAGGAGAAACCAAGCAAGTGTTGGGCGGATTACAGCGATAATGAAGCTGATATTGTTGAGGTTGCAAG
TTGA
AA sequence
>Potri.006G180100.1 pacid=42768617 polypeptide=Potri.006G180100.1.p locus=Potri.006G180100 ID=Potri.006G180100.1.v4.1 annot-version=v4.1
MAPKTGKAKPHKAKGEKKKKEEKVLPTVIEVTVETPDDSQVSLKGISTDRILDVRKLLGVHVETCHLTNFSLSHEVRGPRLKDSVDIILLKPCHLTITEE
DYTEEQSIAHIHRLLDIVACTTSFGASSTSPTKTPGRTGGSKESGSTETGGDNKKIVNKSGKDACTDAMEKADAAVSMCPPPRLGQFYEFFSFSHLTPPV
QYIRRSSRPFLEDKTEDDFFQIDVRVCSGKPMTIVASREGFYPAGKRALLCRSLVSLLQQISRVFDSAYKALMKAFTEHNKFGNLPYGFRANTWVVPPLV
ADNPSVFPPLPVEDENWGGNGGGQGRDGKHDYRPWAKEFAILATMPCKTAEERQIRDRKAFLLHSLFVDVSVFKAVAAIKSIIENQCFLSDTVKSFLHEE
RVGDLIIIITRDVSDASTKLDCKNDGCQVLGVSQEELARRNLLKGITADESATVHDTPTLGVVVVRHCGFTAVVKASSEVNWEGDPIPQDISIEEHPEGG
ANALNVNSLRMLLHKSSTPQSSNTLQRLQGGDLEILHSARSLVRKILEDSLLKLQEESSRYTKSIRWELGACWVQHLQNQAAGKTEAKKNEETNPEPAVK
GLGKQGALLREIKKKTDVKTGKTEEGKDVYAGNNLDMSKKPDSTNQEEMEKKDEEMKVIWKKLLPEAAYLRLRESETGLHLKTPDELIEMAYKYYADTAL
PKLVADFGSLELSPVDGRTLTDFMHTRGLQMCSLGRVVELADKLPHVQSLCIHEMIVRAYKHILQAVVASVNDVADLAACIASCLNMLLGTPSTETEDSD
IINDEKLKCKWVETFVGKRFGWQWKHESYQDLRKFAILRGLSHKVGLELLPRDYDMDNAFPFKRSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKL
EDAVNYGTKALSKLVSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL
TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEVYSLSVQHEQTTLQILQAKLGPEDLRTQDAAAWL
EYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYITPDADMKAREAQKKARAKVKGKPGQNGETVSDEYQKDEILSPTYPIVENSSDKENKSETQ
FAEPGNEKSDSGLPDQSLLKTDDKTQEEDSDEGWQEAVPKGRSPTSRKSSGSRRPSLAKLNTNFMNLPQSSRFRGKPNNFASPKTSPNDPAASTGLTVPV
PKKFAKSASFSTKVNNSGASTGGAEKSSTPKSAPATPASTEQVAKAAPTASPISVQSAGKIFSYKEVALAPPGTIVKAVAEQLPKGNLPMEPSTQGSNEA
SATDVTSGEVTTLKAAEVDNFLKPEAVKHLPASEGMKSPVDQKKETEEGGLVATEQLEGKKSAVEDRTDKEDNGAEIKIVAVKVNTSEAGNISFLGNENL
DTSKDSNTISSPTEVPETQVSDGFPAASPDMEPQSTSTENSGLMEKDASISNEGVEDENTLDPSSDNTNAKALSTEGGKQDETETGKETAKKLSAAAPPF
NPSIIIPVFGSVTIPGFKDHGGLLPSPVNIPPMLTVNPVRRSPHQSATARVPYGPRLSGGFNRSGNRVPRNKPSFNNGEHTGDGNHFSPPRIMNPHAAEF
VPGQPWVPDGYSILQNGYMATTNGMPVSPNGFPISPTGIPVSPNGYPALLNGIQATQNEFPASPVSSVERPMLVSVDVRVENKSEAEAENGVETSAIEVG
VEDQSGEKEHQEEDVNPEIKENPAELPETSDTVVAIETCDSLPIEEKPSKCWADYSDNEADIVEVAS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28080 Tetratricopeptide repeat (TPR)... Potri.006G180100 0 1
AT5G49030 OVA2 ovule abortion 2, tRNA synthet... Potri.010G014500 1.00 0.9742
AT1G52510 alpha/beta-Hydrolases superfam... Potri.001G201500 2.82 0.9648
AT5G35790 G6PD1 glucose-6-phosphate dehydrogen... Potri.014G166800 4.69 0.9562 APG1.2
AT1G22700 Tetratricopeptide repeat (TPR)... Potri.013G114500 5.91 0.9577
AT5G35170 adenylate kinase family protei... Potri.018G113400 6.24 0.9628
AT5G48830 unknown protein Potri.002G241200 7.74 0.9444
AT5G55220 trigger factor type chaperone ... Potri.015G065900 8.24 0.9603
AT5G02830 Tetratricopeptide repeat (TPR)... Potri.006G132700 10.00 0.9564
AT3G03710 PDE326, PNP, RI... resistant to inhibition with F... Potri.019G040100 11.22 0.9492
AT3G32930 unknown protein Potri.003G216700 11.48 0.9397

Potri.006G180100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.