Plant FIBer expression Database

Potri.006G180300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30840 373 / 9e-129 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007707
[exp]
402 / 2e-140 AT4G30840 385 / 2e-133 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.006G180300.1 pacid=42766871 polypeptide=Potri.006G180300.1.p locus=Potri.006G180300 ID=Potri.006G180300.1.v4.1 annot-version=v4.1
ATGGCAAGAACAAACCTTACAGAACCCCCCAAAATCCACAGAATCCCACAACCCAAATTCATTGACGCAATTCGCTGGCTCCCTTCTCCTTCCCCTTTTC
GAAAATCCTTCATTTCCTCCCTCTTTGATTCGGATTTCCACACTCCTTCCCTCGAAATCCACTCTCTAGACCCTTCTAAAACCCTAACCACCCCACTCTT
GTCCTGGACCCCACCTTCCCGTATTTCCTCTCTCAAATCCACTCCTTCCCTCTTCGCTGCCTCCACTTTCCTGGGTTCTCTCCACATTTTCAAAACGCCA
GAGGAAATGTCGGTTTTGGGGAATGACATGTCGGGTTTGGGTGGTGAAACGTCGGTTATGGAACCTGTAGTGTCGGTTGTTGGCAGGGAGTTTCATGTGG
GGTCCATTGGGGGTGTGGATTTGATGGAAGGAGGGAGTGAGTGTGTTAGTGTTGGAGAAGATGGGAGGGTTAATTTGGTTGTTGAGAAGGGAGGTTTTAG
GAGGGTTTTTGATGGGAATGGATTGGTTTCATATTCGGCAGTTAAATGGGCTTCCCCGTCTGAGTTTGTGACTGGTGGATGTGGGTTTGGACTTCAGTGG
TGGGACCTTAGACAGCCTGGTGCTGCCGTTGCTCAGTTTAAGGGTAGCTGGGATCGTGGCACAACTTCTGGGATCATTCACTCCATTGATATCCATCCAT
CCCGTAAGCACACATGTCTGGCAGGAGGTTCATCAGGTACTGTATTTGCCTGGGATTTAAGAAGGCAACAAGAACCGATTATTCTTTCTTCAATTGGCTC
TAGTGACACTATGACCCAACCATTATCTGAAAGCGAGGTTTGGGAAGTTCAATATGACTACTACACCAAGTCTTTGAATAGTAATATTTCATCATCGCGG
ATCTTACCTGCTATGATCTGCTCTGAAGATGGGATCCTTGCTGTCATTGAACAAGGTGAGGAACCCACTGAGCTCTTGGCTGAACCCTGTGCCATCAACA
GCTTTGACATTGATCGCCAAAACCCCTCGGATGTAATATGTAGTTTGGAGTGGGAATCCATTGTCATTTTGTCAAGGCCGTAA
AA sequence
>Potri.006G180300.1 pacid=42766871 polypeptide=Potri.006G180300.1.p locus=Potri.006G180300 ID=Potri.006G180300.1.v4.1 annot-version=v4.1
MARTNLTEPPKIHRIPQPKFIDAIRWLPSPSPFRKSFISSLFDSDFHTPSLEIHSLDPSKTLTTPLLSWTPPSRISSLKSTPSLFAASTFLGSLHIFKTP
EEMSVLGNDMSGLGGETSVMEPVVSVVGREFHVGSIGGVDLMEGGSECVSVGEDGRVNLVVEKGGFRRVFDGNGLVSYSAVKWASPSEFVTGGCGFGLQW
WDLRQPGAAVAQFKGSWDRGTTSGIIHSIDIHPSRKHTCLAGGSSGTVFAWDLRRQQEPIILSSIGSSDTMTQPLSESEVWEVQYDYYTKSLNSNISSSR
ILPAMICSEDGILAVIEQGEEPTELLAEPCAINSFDIDRQNPSDVICSLEWESIVILSRP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30840 Transducin/WD40 repeat-like su... Potri.006G180300
[exp]
0 1
AT3G21110 PUR7, ATPURC PURIN C, purin 7 (.1.2) Potri.017G051500
[exp]
2.44 0.8685
AT2G41500 EMB2776, LIS LACHESIS, WD-40 repeat family ... Potri.006G045800
[exp]
7.07 0.8568
AT1G50380 Prolyl oligopeptidase family p... Potri.007G001300
[exp]
9.74 0.7684
Potri.014G052766
[exp]
11.48 0.7572
AT3G22440 FRIGIDA-like protein (.1) Potri.018G078701
[exp]
18.73 0.8495
AT1G29790 S-adenosyl-L-methionine-depend... Potri.011G079000
[exp]
20.12 0.7734
AT5G19750 Peroxisomal membrane 22 kDa (M... Potri.006G032500
[exp]
21.35 0.8177
AT3G13160 Tetratricopeptide repeat (TPR)... Potri.011G032500
[exp]
22.24 0.8210
AT3G55510 RBL REBELOTE, Noc2p family (.1) Potri.008G043400
[exp]
25.09 0.8318
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.006G024100
[exp]
25.49 0.8382

Potri.006G180300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.