Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18260 53 / 2e-07 RING/U-box superfamily protein (.1) AT4G39140 48 / 1e-05 RING/U-box superfamily protein (.1.2.3.4.5) AT5G57820 45 / 2e-05 zinc ion binding (.1) AT1G14180 46 / 4e-05 RING/U-box superfamily protein (.1.2) AT2G21500 45 / 8e-05 RING/U-box superfamily protein (.1.2) AT1G19680 44 / 0.0001 RING/U-box superfamily protein (.1) AT1G75400 42 / 0.0009 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G042000 [exp] 57 / 2e-08 AT5G57820 47 / 9e-06 zinc ion binding (.1) Potri.018G119600 [exp] 53 / 9e-08 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 52 / 6e-07 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.006G063100 [exp] 50 / 1e-06 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.019G032300 [exp] 50 / 2e-06 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.009G120000 [exp] 50 / 2e-06 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.002G031600 [exp] 48 / 7e-06 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.005G231500 [exp] 48 / 9e-06 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.004G158400 [exp] 45 / 6e-05 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035820 [exp] 84 / 2e-17 AT5G18260 47 / 3e-06 RING/U-box superfamily protein (.1) Lus10007703 [exp] 71 / 8e-14 AT5G57820 47 / 8e-07 zinc ion binding (.1) Lus10002316 [exp] 57 / 2e-08 AT1G14180 48 / 1e-05 RING/U-box superfamily protein (.1.2) Lus10036764 [exp] 49 / 3e-06 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10037162 [exp] 49 / 6e-06 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10017978 [exp] 47 / 2e-05 AT4G39140 318 / 3e-105 RING/U-box superfamily protein (.1.2.3.4.5) Lus10041970 [exp] 47 / 3e-05 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10005511 [exp] 45 / 3e-05 ND / Lus10020256 [exp] 46 / 4e-05 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10002639 [exp] 46 / 7e-05 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G180600.2 pacid=42768146 polypeptide=Potri.006G180600.2.p locus=Potri.006G180600 ID=Potri.006G180600.2.v4.1 annot-version=v4.1 ATGGACATTACTCATGATGTCAGGACCTGTACAGCCAACTTGAATTGTGATTGTGAGCCAACTGGGTTATTGTTAGGAGTAAATGGTGGTACAAAAGCTA GATATGTAAATAGGGATTCACGAAAATGTTCTGAAATCCGTGGAACTGCATCGAAACTTTCTCGTCGAAGAGACTCTACTTTTCCAGTTGAAAATCAGGG AAAATTGTATAGGATAAGTTCAGAAAATGCAACTGAAGCAAGAACCCCAGATGAACATGGACTACAGAATGAAAATATCAAGGCAGCTGGGACCTCCCAA ACTGTATCAACCTCCGATTATGTTGCTGCTGAGGCTAAAAGAAGCAACGGCCTAAAAGTTCGGTCGGGTATTGTACAGTTCGACCCTGAAGTGTATGGTA AATCAGGTCTTGCTCAACCTCATCAGCTAACTCAGAACAGCAGGCACTCTGCAAAAGCTGCTAATGATAATGGGCATCCAATGCGACCTGTCAAGAAAAG TGGAGATAAATTACCTCCAACTTCAGCACAGGATTTGGGGGTGAAGGCTAAGATAGTACCTCTAAAGTATTCATCTAAACCATCTTCAAGCGCTTGGAAA GTAAAGGAAAAGAAAGAAACTTCAAAAGAACCATCTAATTTGTCTCCGAACATGAGTTCATCCGATCAAGTTCATAGGAGTCAGCCCACTCAGAAGGGAA AATGTTCTGCAGGAGCTGTTAAGAAGAGTAGAAACCAAATACAAGCTGTTAAAAAGAGTGGGAAAAAAATAACTCCAACTCCCGAGCAGGAAAAGGAAAA GAAAGAACCTTCAGAAGGTCCATCTAATTTTCCCACTAAAATAAGCTTGTCTGATCGAGCTCACAGGGATCAGCCTGTTCAGAAGAGAAAATGTTCTGCA GAAGCTGTTAAGAAGAGCGGAAACCAATTACCTGCAATTCCCAAGCGAGTATGGCAGGTAAAGGGAAAGATAGCATCTTCACAGGATTCAGGTAAAACAT CTTCAAAGGTTTTCCAGGTGAAGAAAAAGACATCTTCTACATTGTCTAAAAAAACGAGTTCATCCCACGCCAAAACAAGAAGCTTCTCTCCTGAACATTA TATAAAGTGGGATGATTTTGTTAAACTTGGACATAATTGTTTTTTATGCGAGAATGATCTAGCTCATTCGCCATTACCAACTGATGAAGAGTTGGAGTCT GATAAATTTCCAGATGTTGCTGTTCTTCCATGTGGTCATGCATTCCATGCCATGTGCTTGCAGCAAGCAATACCTGAAGATCAGATGAGAGATCCTTCAT GCTTTGTATGTGACAGCTTACAATGA
AA sequence Show only first row Show all	>Potri.006G180600.2 pacid=42768146 polypeptide=Potri.006G180600.2.p locus=Potri.006G180600 ID=Potri.006G180600.2.v4.1 annot-version=v4.1 MDITHDVRTCTANLNCDCEPTGLLLGVNGGTKARYVNRDSRKCSEIRGTASKLSRRRDSTFPVENQGKLYRISSENATEARTPDEHGLQNENIKAAGTSQ TVSTSDYVAAEAKRSNGLKVRSGIVQFDPEVYGKSGLAQPHQLTQNSRHSAKAANDNGHPMRPVKKSGDKLPPTSAQDLGVKAKIVPLKYSSKPSSSAWK VKEKKETSKEPSNLSPNMSSSDQVHRSQPTQKGKCSAGAVKKSRNQIQAVKKSGKKITPTPEQEKEKKEPSEGPSNFPTKISLSDRAHRDQPVQKRKCSA EAVKKSGNQLPAIPKRVWQVKGKIASSQDSGKTSSKVFQVKKKTSSTLSKKTSSSHAKTRSFSPEHYIKWDDFVKLGHNCFLCENDLAHSPLPTDEELES DKFPDVAVLPCGHAFHAMCLQQAIPEDQMRDPSCFVCDSLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G18260			RING/U-box superfamily protein...		Potri.006G180600 [exp]	0	1
AT4G26965			NADH:ubiquinone oxidoreductase...		Potri.001G109600 [exp]	4.00	0.7829
AT1G32730			unknown protein		Potri.003G085901 [exp]	4.69	0.8019
AT1G08710			F-box family protein (.1.2)		Potri.013G067600 [exp]	8.66	0.7922
AT2G17450		RHA3A	RING-H2 finger A3A (.1)		Potri.007G057300 [exp]	9.48	0.7442
AT1G24267			Protein of unknown function (D...		Potri.001G058700 [exp]	12.96	0.7630
					Potri.003G152950 [exp]	16.97	0.8005
AT5G06410			DNAJ heat shock N-terminal dom...		Potri.006G200900 [exp]	23.95	0.7474
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	24.24	0.7311
AT1G78420			RING/U-box superfamily protein...		Potri.011G096000 [exp]	27.85	0.7576
AT3G24170		ATGR1	glutathione-disulfide reductas...		Potri.001G050000 [exp]	27.92	0.6449	Pt-GR.2,PtrcGR2

Compare expression of checked genes

Potri.006G180600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.