Plant FIBer expression Database

Potri.006G180650 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G180650.1 pacid=42767601 polypeptide=Potri.006G180650.1.p locus=Potri.006G180650 ID=Potri.006G180650.1.v4.1 annot-version=v4.1
ATGTGTGGATCAAAGTTCGGGATTCGATGGGTGTGTGGATTGTGTTTGCGGATTGTGGCTCTTTCAATTGTGGCCACTATAGCATACACAACCCTCAAAC
TTATTGTCGAGACAACACGTTCTGCGTCGGACCAATCCAAATTAATAGCTTGTTTCAACATCTTTTTCCTCATTATTGCAGCCCTTTGTCTTCTTTACTG
TGCTGCTGGAATTTTTGCAGCAATCTTCCTCTCTATCAGAGATTGTGCAGACGATGTAATGGCCCTCCTATTTACCAAAAATAAGATTGCTCCTTCACCT
TCACCCCCTACAACAGTACTCCAAGATGACCCACCCCCACCTGATCACGATCATCTTCCCGTTTAG
AA sequence
>Potri.006G180650.1 pacid=42767601 polypeptide=Potri.006G180650.1.p locus=Potri.006G180650 ID=Potri.006G180650.1.v4.1 annot-version=v4.1
MCGSKFGIRWVCGLCLRIVALSIVATIAYTTLKLIVETTRSASDQSKLIACFNIFFLIIAALCLLYCAAGIFAAIFLSIRDCADDVMALLFTKNKIAPSP
SPPTTVLQDDPPPPDHDHLPV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G180650
[exp]
0 1
AT1G16250 Galactose oxidase/kelch repeat... Potri.011G046100
[exp]
2.00 0.9899
AT4G17810 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers sup... Potri.001G142900
[exp]
3.00 0.9868
AT1G09560 GLP5 germin-like protein 5 (.1) Potri.009G157100
[exp]
3.16 0.9887 Pt-GER2.21
Potri.015G120600
[exp]
5.00 0.9778
AT1G56140 Leucine-rich repeat transmembr... Potri.018G132900
[exp]
5.65 0.9793
AT4G08250 GRAS GRAS family transcription fact... Potri.019G007100
[exp]
7.48 0.9700
AT1G66950 ABCG39, PDR11, ... ATP-binding cassette G39, plei... Potri.008G024400
[exp]
12.64 0.9352
AT3G07600 Heavy metal transport/detoxifi... Potri.009G048100
[exp]
12.64 0.9486
Potri.015G120500
[exp]
14.96 0.9376
AT1G79620 Leucine-rich repeat protein ki... Potri.013G053001
[exp]
15.87 0.9714

Potri.006G180650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.