Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30790 1262 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103000 [exp] 1869 / 0 AT4G30790 1392 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005509 [exp] 1472 / 0 AT4G30790 1486 / 0.0 unknown protein Lus10007701 [exp] 1457 / 0 AT4G30790 1493 / 0.0 unknown protein Lus10007700 [exp] 1266 / 0 AT4G30790 1327 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04108 [poplar] [flax] APG17 Autophagy protein Apg17 PF10377 [poplar] [flax] ATG11 Autophagy-related protein 11
Representative CDS sequence Show only first row Show all	>Potri.006G180800.1 pacid=42769026 polypeptide=Potri.006G180800.1.p locus=Potri.006G180800 ID=Potri.006G180800.1.v4.1 annot-version=v4.1 ATGAGTTCAAGCATCACAGAGGGTTTGGTAAATCAGACCAGGCTCGTAGTTCATATAGCAGAAAATGGTCATTCACTTGAACTTGTTTGTGATGAAACAA CGCATGTGGAGGCGGTTATGCGTTATATCGAAAAAGTTGCTAGGATTAACTTCAATGACCAGCTTGTTCTGTGTTTGGAAAAGAAACTTGAACCTCAGCA GCCGCTTTCTGCTTACAAGCTTCCATCTAGCGATGGGGAAGTGTTTATATTTAACAGAGCAAGGATGCAAACCAATCCCCTTCCCCCTCCACTCGAACAA ATTGATGTACTTGAAATTGCAGACCCTCCACCACCACCTTCTTCGCATGACCCCCATCCTTTAGATGATGCTCCAGACCCAGCTTTGAGGGTTTTGCCTT CTTATGAGAAACAATTTAGGTACCATTACCATAGGGGCTATGCAATTTATAGTAGAACCCAAGTAAAGCATGAACATTGCCTGAGGTTATTGACGGAGCA AAAGGTTCAGGAGAGGGCAATGGAGGTTGCTAGGATTAATGTGCAGCAATTCTACAGGGCAATTCTTCAGAACTACTCAGAGTTCATCAAGCGTTATACA CAACAACACAGGATACATTTAGATCTTTTAACAAATTTTGAGAGAGATTTAGAGAAACTGAGATCGATCAAGCTTCATCCAGCCTTGCAATCTGATTCAC GGAAATGTTTAGTCGATTTTGTGAAGGAAGATAACTTGAGGAAGGCCGTGGATAATTGTAGCCATTCACATAGGCAGTTTGAGAAGAAGGTTTTAGAGTT TAAGCAAAAGTTCGGTGATGCAAAGCGCAAAGTGGAAGAATTATTTTCTTGTGGAGCTTCGTCATCTATTAGGAATTTAGATCTTGCCATCAAGGAGCGT CAGCCAGCCATCAATGAAATGAAGAGCATAATGCAGTCTTTGAGAGACGATGTAAGCACGGTAAAGGAACTTGTGCATGATTGTCTGTCATGCCAGTTGT CCTCAACTCGTCTCCATACTGAAGTTTCAGCCCTGGGTCTTATGTATGATGTCCATGAAAAGAGTCATTTGCCCACCATGCTGGCTGTTGGTGATTTAAT TTCCAAGCTGCTTGGTTTTTGCAAGGATAAGAAGAACGAGATGAACATCTTTGTGCATGATTTCCTACAAAAGATTGCCTATGTTACTTTCCTCATGAAA GATGTGAAGTTAAGGTTTCCTGTTTTTAGAGAGGCAATGTTGCGTCAGGATGATATTTTTAGGGACCTAAAACTATTCCATGGGATTGGTTCTGCATACA GAGGCTGCCTTGCTGAAGTAGTGAGAAGAAAGGCTTCTATGAAACTTTACATGGGCATGGCTGGACAACTGGCTGAGCAGCTTGCTACAAGGAGGGAGGT TGAGGTTAGGAGACGGGAGGAGTTTCTGAAAGCATACAGTTCATATATACCAAGAGATATATTAGCATCAATGGGGTTATATGATGCTCCTAATCAGTGT GATGTCAATATATCTCCATTTGACACTAATTTGCTTGACATTGACATCTCAGACTTGGACCGTTATGCTCCTGATTATTTGGTTGGACTTCCTTCAAAAA GTGACAAGACTGCAACTTTGAAAGGCTCATTGTCTATGTCTAATGACAGTTCTCGCTCAGCTGAGATGGAAGAAATTGGTGAGGAAGCACTTGAGAAAGA TTGCTCTGAGGAGCCCCTCGAGGGCTGTGAGTTGTTAGAGATTGCTGGAACTAGCAAGATGGAAGTTGAGAATGCAAAACTGAAAGCTGAACTAGCTTCT GCAATAGCCTTGATATGTTCCCTTTGCCCAGAAATTGAATACGAGTCAATGGATGAAAGTACAGTGGGTAGTCTATTGAAGAATGCAGATAAGACAACTG AAGCCTTGCGGCTGAAAGATGAGTATGGAAAGCATCTCCAATCTTTGCTTAAGGCAAAGCAAATACAGTGTATGTCATATGAGAAGCGCATTCAAGAACT AGAGCAGAGATTGGCTGACCAGTATTTGCAGGGGCAGAAACTTTCAAATAGTAAAGATGCATCAGACTATGCTCTTTTGGCTGCAAAGACTGAAGACTTC AAACCAGAAATTTCCAGTGGTGAAGCACCCATGCCTTATGCAATGACCTCAGAGCCCATGGATGAGGTTTCTTGCATTTCTAATTCTTTGAATTCAAAGC TGGGGCTTTTCACCAGGCAACCAAGCAAAGATAGAGAAGGGTTTGATGAAAATATGATGGACTCGTCTGGGATGTTCAATACTCAGTTGGATTCATCAAT GGTGGAGCCACATCGTGAAGAGCTGCAAGTTTGTGATAAAGATGGGAAGGGTAAGATGGTGGGACAACTGGGCATGTCACTGACAAACAGTTCCACAGCT GAGAGTATGCCGGAGCCTCTCGATGTCTCTCCTTCAGATGCAGTTGCTGAGCCTAAAGTCAGTGGTGACCATGGAATTATGTTAGAATTGCAAAATGCAC TTGCAGAAAATTCAAAACAATTGAGTGAAACTGAAGCGAAGCTCAAGGCTGCTGTCGAGGAGGCTGCCATGCTTACTAGGGAGTTAGAAATGAGTCAGAA GCTCCTTGATGAATCTCAGATGAATTGTGCTCACTTGGAGAATTGCTTGCATGAAGCAAGAGAGGAAGCTCAAACCAATCTTTGTGCAGCTGACCGGAGG GCCTCAGAATATAATAAACTGCGTGCATCTGCTGTGAAACTCCATGGCCTTTTTGAAAGACTTAGGTGCTGTGTATGTGCTCCTGGTGGAGTTGCTGCTT TTGCTGATTCTTTGCGTGCTTTAGCTCAATCTATGGCCAATTCCAGCAATGACAAAGATGATGAGGGTGCTGCTGAATTCCAGAAATGCATTAGTGTCCT TGCAGATAAAGTTGGTTTATTCTTGTCCACACACCGCGCAGAGCTGCTTGACAAGTACCCAAAGCTTGAAGCTGCAAACGAACAGCTTGGAAAAGAATTG GAAGAGAAGAAAGAGCTGGTTGTCACTTTATACAAAAAGCATCAACTTGAGAAGCAGGCAAACAAGGAAAGGATATCCTTTAGCCGTTTTGAAGTCCATG AGATTGCTGCATTTGTTCTGAACTCAGCTGGACATTATGAGGCTATCAACCGGAACACCTCTAACTACTACCTGTCTGCTGAATCTGTGGCCCTGTTCAC AGACCATCTCCCAAGCCGCCCCAGCTACATTGTTGGGCAGATAGTGCATATAGAACGCCAAGCTGTAAAGCCATTGCTTCCTACCTCAACGAGGCCTGAG CATGGCAAGGTAGATGAAGTGGATCTTCTGACCACTGACCAAGGGACTGACCGTTTGAACTTCAATTTGGGACCGACTTCCAACCCATACAATCTTCCTA TCGGGTGTGAATACTTTGTAGTGACAGTAGCCATGTTACCGGATTCAACCATTCATTCAGCGCCTCCTTCCTGA
AA sequence Show only first row Show all	>Potri.006G180800.1 pacid=42769026 polypeptide=Potri.006G180800.1.p locus=Potri.006G180800 ID=Potri.006G180800.1.v4.1 annot-version=v4.1 MSSSITEGLVNQTRLVVHIAENGHSLELVCDETTHVEAVMRYIEKVARINFNDQLVLCLEKKLEPQQPLSAYKLPSSDGEVFIFNRARMQTNPLPPPLEQ IDVLEIADPPPPPSSHDPHPLDDAPDPALRVLPSYEKQFRYHYHRGYAIYSRTQVKHEHCLRLLTEQKVQERAMEVARINVQQFYRAILQNYSEFIKRYT QQHRIHLDLLTNFERDLEKLRSIKLHPALQSDSRKCLVDFVKEDNLRKAVDNCSHSHRQFEKKVLEFKQKFGDAKRKVEELFSCGASSSIRNLDLAIKER QPAINEMKSIMQSLRDDVSTVKELVHDCLSCQLSSTRLHTEVSALGLMYDVHEKSHLPTMLAVGDLISKLLGFCKDKKNEMNIFVHDFLQKIAYVTFLMK DVKLRFPVFREAMLRQDDIFRDLKLFHGIGSAYRGCLAEVVRRKASMKLYMGMAGQLAEQLATRREVEVRRREEFLKAYSSYIPRDILASMGLYDAPNQC DVNISPFDTNLLDIDISDLDRYAPDYLVGLPSKSDKTATLKGSLSMSNDSSRSAEMEEIGEEALEKDCSEEPLEGCELLEIAGTSKMEVENAKLKAELAS AIALICSLCPEIEYESMDESTVGSLLKNADKTTEALRLKDEYGKHLQSLLKAKQIQCMSYEKRIQELEQRLADQYLQGQKLSNSKDASDYALLAAKTEDF KPEISSGEAPMPYAMTSEPMDEVSCISNSLNSKLGLFTRQPSKDREGFDENMMDSSGMFNTQLDSSMVEPHREELQVCDKDGKGKMVGQLGMSLTNSSTA ESMPEPLDVSPSDAVAEPKVSGDHGIMLELQNALAENSKQLSETEAKLKAAVEEAAMLTRELEMSQKLLDESQMNCAHLENCLHEAREEAQTNLCAADRR ASEYNKLRASAVKLHGLFERLRCCVCAPGGVAAFADSLRALAQSMANSSNDKDDEGAAEFQKCISVLADKVGLFLSTHRAELLDKYPKLEAANEQLGKEL EEKKELVVTLYKKHQLEKQANKERISFSRFEVHEIAAFVLNSAGHYEAINRNTSNYYLSAESVALFTDHLPSRPSYIVGQIVHIERQAVKPLLPTSTRPE HGKVDEVDLLTTDQGTDRLNFNLGPTSNPYNLPIGCEYFVVTVAMLPDSTIHSAPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30790			unknown protein		Potri.006G180800 [exp]	0	1
AT5G22450			unknown protein		Potri.009G164400 [exp]	1.73	0.8190
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	7.07	0.8095
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	7.34	0.7581
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	11.31	0.7583
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	11.40	0.7572
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	12.84	0.7520
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	14.49	0.7688	Pt-SWP.2
AT5G61450			P-loop containing nucleoside t...		Potri.003G108000 [exp]	19.49	0.7302
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	21.07	0.7785	PAFC901
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.006G201100 [exp]	23.81	0.7681

Compare expression of checked genes

Potri.006G180800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.