Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30820 171 / 9e-55 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103200 [exp] 308 / 2e-108 AT4G30820 179 / 7e-58 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022901 [exp] 175 / 4e-56 AT4G30820 144 / 4e-44 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3) Lus10024924 [exp] 171 / 2e-54 AT4G30820 143 / 2e-43 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06391 [poplar] [flax] MAT1 CDK-activating kinase assembly factor MAT1
Representative CDS sequence Show only first row Show all	>Potri.006G180900.1 pacid=42768323 polypeptide=Potri.006G180900.1.p locus=Potri.006G180900 ID=Potri.006G180900.1.v4.1 annot-version=v4.1 ATGGTAGTCTCCAATATTAATCCCCACAACAAGGAGATAGTGGTTAGGAGAAGGATTGCTAGCATATTCAATAAGAGAGAAGATGATTTTCCGTCGTTGA GGGAATACAATGATTACTTGGAAGAAGTAGAGGATATGATATTTAACTTGGTTGCTGGAGATGATGTCGCTGCTACTGAAGTAAAAATTGCTGAGTATCA AGAAGAAAATGCGGATCTAATATTGATTAATCACGCTCGGAAGGCTGAAGAATTAGCCTTAGCTATGTCGGCAAGCAAGGGGCCTCCTGCACAAACTGAT AATACTGATGGGAGCTCCCAGGGCATAAGCGTTGGAGCTGGGCAGTATGCTCCTACAATTGTTGGGGGACAGCCACGGCCAACAGGCATTGCTCCACAAC CAGTGCCTCTCAGAGGGGGGCCAGACATGCACGGTTATTTAGAAGATGAGGAAACGATGAGGATCCGAACAGAGAATGCGAGTAGAGCGGCTGGGTGGAG CATAGAATTCAGTAAGAAAAGGGGATTTGAGGAAGCCTTTGCAAGCTTTTGCTTTTAG
AA sequence Show only first row Show all	>Potri.006G180900.1 pacid=42768323 polypeptide=Potri.006G180900.1.p locus=Potri.006G180900 ID=Potri.006G180900.1.v4.1 annot-version=v4.1 MVVSNINPHNKEIVVRRRIASIFNKREDDFPSLREYNDYLEEVEDMIFNLVAGDDVAATEVKIAEYQEENADLILINHARKAEELALAMSASKGPPAQTD NTDGSSQGISVGAGQYAPTIVGGQPRPTGIAPQPVPLRGGPDMHGYLEDEETMRIRTENASRAAGWSIEFSKKRGFEEAFASFCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30820			cyclin-dependent kinase-activa...		Potri.006G180900 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.006G212400 [exp]	5.29	0.7238
AT5G64420			DNA polymerase V family (.1)		Potri.009G079900 [exp]	13.71	0.7125
AT1G33270			Acyl transferase/acyl hydrolas...		Potri.003G020800 [exp]	18.89	0.6461
AT1G74240			Mitochondrial substrate carrie...		Potri.012G066000 [exp]	20.37	0.6860
AT3G54460			SNF2 domain-containing protein...		Potri.003G197701 [exp]	21.54	0.6716
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Potri.006G205100 [exp]	32.93	0.6366	Pt-E2F3.1,E2Fa_1
AT5G17270			Protein prenylyltransferase su...		Potri.004G080800 [exp]	33.67	0.6845
AT1G11420		ATDUF2	DOMAIN OF UNKNOWN FUNCTION 724...		Potri.014G117800 [exp]	34.33	0.6686
AT3G12010			unknown protein		Potri.006G195000 [exp]	34.98	0.5713
AT3G63400			Cyclophilin-like peptidyl-prol...		Potri.005G215800 [exp]	35.22	0.6558

Compare expression of checked genes

Potri.006G180900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.