Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24120 1360 / 0 PDE319, SCA3 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) AT5G15700 1123 / 0 DNA/RNA polymerases superfamily protein (.1.2) AT1G68990 1106 / 0 MGP3 male gametophyte defective 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103300 [exp] 1761 / 0 AT2G24120 1381 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Potri.008G112800 [exp] 1167 / 0 AT1G68990 1269 / 0.0 male gametophyte defective 3 (.1.2) Potri.017G105801 [exp] 1161 / 0 AT5G15700 1331 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Potri.010G136700 [exp] 1151 / 0 AT1G68990 1248 / 0.0 male gametophyte defective 3 (.1.2) Potri.004G111600 [exp] 1147 / 0 AT5G15700 1326 / 0.0 DNA/RNA polymerases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022181 [exp] 1363 / 0 AT2G24120 1300 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10031952 [exp] 1120 / 0 AT5G15700 1274 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10019208 [exp] 1120 / 0 AT1G68990 1245 / 0.0 male gametophyte defective 3 (.1.2) Lus10035150 [exp] 1119 / 0 AT5G15700 1273 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10005097 [exp] 1111 / 0 AT5G15700 1289 / 0.0 DNA/RNA polymerases superfamily protein (.1.2) Lus10034355 [exp] 1104 / 0 AT2G24120 1276 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10036844 [exp] 1073 / 0 AT1G68990 1244 / 0.0 male gametophyte defective 3 (.1.2) Lus10010771 [exp] 868 / 0 AT2G24120 814 / 0.0 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2) Lus10010770 [exp] 480 / 5e-163 AT2G24120 464 / 2e-157 SCABRA 3, PIGMENT DEFECTIVE 319, DNA/RNA polymerases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00940 [poplar] [flax] RNA_pol DNA-dependent RNA polymerase PF14700 [poplar] [flax] RPOL_N DNA-directed RNA polymerase N-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G181100.2 pacid=42770421 polypeptide=Potri.006G181100.2.p locus=Potri.006G181100 ID=Potri.006G181100.2.v4.1 annot-version=v4.1 ATGGCTTCCACAACCCCTTTCTCTATTCAACACCCAACATGGACAACATCAAAAACTCTTAAATTTCATGAACCCTACAAAAACCTCCATTTTCTCTCTA ACCCATCTTCTCATTCTCTTTCCAATCCTTCTCTCTCTTCCTCTTCTTTCCCTCTCAATCCCAAACTTTCTATCCTAAACCCACCACTTCTCTTTCACCC TTTACATGATTCTTCTCATGACCGTCTCCTTGAAGACTTTGAAATCCCCACCATTAATAACCACCAAAAGCTTGAAACTTTGATCAAATTTGACCAAATT GTGCATGGAGAGTCTTCCAAAAGAGTTTTTATTCGAGACTCACCTTGGATTTCAGCTCTTTATTGGAAGGGTACGCATAAAATAGCCAATAAAAAAGTGA AGTTAGAGTTAAAGGATATTGAGAAGAGGAAGTATAATTTGTTAAGGAGGAGGCAAATTAGGGAAGAGACCGAGGCGTGGGAGAGAATGGCTGAGGAGTA TACGGGGTTAGTTAAGGAAATGTGTGAGAGAAAGTTGGCACCTAATTTGCCTTACGTTAAAAGTTTGTTCTTGGGGTGGTTTGAACCATTGAAAGAGGCT ATAGAGAGGGAGCAGAAACTGGAGAAATCCAAGAAGCAGAAGTCGGCATTTTCTCCCAATATTGAATTGTTGCCAGCTGATAAAATGGCAGTCATTGTTA TGCATAAGATGATGGGGTTGGTGATGGTGGGGCATGAAGATGGGTGCGTGCGGGTTGTCCAGGCTGCGGTGCAGATTGGTATAGCTATAGAGCAGGAGGT TAGAATTCATAATTTCTTGGAGAAGACCAAGAATCATCAAAGGAAGAAGACAATGCATGATGTTCAAGAGAGTATGGACAAGGAGAAGGAGATGCTCAGG AAACGTGTAAATAGTTTGATTAGAAGGAAAAGGCTCATGGAGGTCCAAAATCTGGTGATACAGGATGAAACTAAACCTTGGAATCGAGATAAACAAGCTA AGCTTGGAAGTCGTCTAATAGAATTATTAACTGAAACAGCTTATGTACAACCCCCAGTTGACCAGTCAGAGGGCATTCCACCAGATGTTCGACCTGCATT TAGGCACATATTTAAAAGTGTAACAAAGAATCCAGGGCAGAAAACTGTGAAGAAGTATGGGGTTATAGAATGCGATCCCCTCATCCTCACAGGGCTTGAT GGAACGGCTAAGCACATGTTGATTCCTTATTTTCCAATGCTGGTGCCTCCCAAAAAATGGAGAGGGTATGATAAGGGTGGGCACTTGTTCTTGCCTTCAT ATATCATGCGCACTCATGGATCTAGGCAGCAACAAGATGCAGTCAGGAGTGTTCCTGGGAAACAGATGCAGAAAGTATTTGAGGCCCTGGATACACTCGG AAATACCAAATGGAGGGTGAACGGGAAAGTGCTGGATGTGGTGGAGAGGATATGGGCGAGTGGTGGTAACAATGCAGGCTTGGTCAATCGAGGAGATATT CCTATACCAGAGAAACTATCCTCAGATGATCTAACAGAAATTCAAAAGTGGAAATGGAGTGTGAGGAAGGCAAAGAAGATAAATCAAGAGAGGCACTCTC AAAGATGTGACACTGAACTTAAGCTTTCTGTTGCTCGAAAGCTGAAAGATGAGGAGGGATTTTATTATCCTCACAATCTTGATTTTCGAGGCCGCGCATA CCCGATGCACCCACATTTGACTCATCTAAGTTCCGATCTTTGTCGAGGAGTTCTTGAATTTGCAGAAGGAAGGCCATTAGGGAAGTCTGGGTTATGTTGG TTGAAAATACATTTAGCAAACTTGTATTCTGGTGGGGTTGAAAAGTTGTCGCATGATGGCCGTCTAGCATTTGTGGAAAATCATCTAAGTGAGATATTTG ATTCAGCAGAGAACCCTGTCAATGGAAAGCGCTGGTGGTTAACAGCTGAAGATCCTTTCCAGTGCTTAGCTGCTTGTATTAATCTGTCAGAAGCCTTAAA GAGTGCGTCACCACATACTGTCATCTCCCACCTGCCAATCCATCAGGATGGCTCATGCAATGGTCTACAGCACTATGCAGCCTTGGGAAGAGACAGTCAA GAAGCAGCAGCAGTTAACTTAGTTGCTGCAGAGAAACCTTCAGATGTTTATTCAGAAATTGCCACTAGGGTCCATGAAATAATTAGAAGAGACAGCAATA AGGATCCTGCTACAAACCCACATGCTTTATTAGCCAAGGTCCTAATTGATGAGGTGGATCGCAAACTGGTTAAACAAACAGTGATGACTTCAGTGTATGG TGTCACTTATGTTGGGGCACGTGAGCAGATAAAAAGAAGGTTAGAGGAGAAGGGTCACATCACAGATGATAGAGTGCTCTTCAGTGCAGCCTGTTATGCT GCTAAAGTGACATTGACTGCTTTAGGAGAGTTGTTCCAAGCTGCACGTGATATAATGGGCTGGCTTGGTGATTGTGCAAAGGTTATTGCTTCAGAAGATC AGCCTGTGCGGTGGACAACTCCACTAGGTCTTCCTGTCGTGCAGCCATACTATAAGACTCAACGACATCTTATAAGAACTTCACTTCAGGTTTTGGCCCT GCAACGGGAAGGCAGTTCGGTGCAGGTTAGAAAACAGAGAACTGCTTTCCCTCCAAATTTTGTGCACTCGCTTGACGGCTCACATATGATGATGACTGCT GTTGCATGCAGGGATGCTGATTTACGTTTTGCAGGTGTTCATGACTCTTTCTGGACACATGCAAGAGACGCGGATTTGATGAATAGGATACTGCGGGAAA AATTTGTGGAGCTTTATAACATGCCAATACTTGAAAATTTACTTGAAGACTTCCAGACGTCATATCCAACATTGAAGTTTCCATCTCTGCCTGAGAGAGG CAACTTTGACTTGCAAGAAGTTCTTAGATCTCCATATTTCTTCAACTGA
AA sequence Show only first row Show all	>Potri.006G181100.2 pacid=42770421 polypeptide=Potri.006G181100.2.p locus=Potri.006G181100 ID=Potri.006G181100.2.v4.1 annot-version=v4.1 MASTTPFSIQHPTWTTSKTLKFHEPYKNLHFLSNPSSHSLSNPSLSSSSFPLNPKLSILNPPLLFHPLHDSSHDRLLEDFEIPTINNHQKLETLIKFDQI VHGESSKRVFIRDSPWISALYWKGTHKIANKKVKLELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEMCERKLAPNLPYVKSLFLGWFEPLKEA IEREQKLEKSKKQKSAFSPNIELLPADKMAVIVMHKMMGLVMVGHEDGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMDKEKEMLR KRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLTETAYVQPPVDQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLD GTAKHMLIPYFPMLVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRVNGKVLDVVERIWASGGNNAGLVNRGDI PIPEKLSSDDLTEIQKWKWSVRKAKKINQERHSQRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPLGKSGLCW LKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPFQCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQ EAAAVNLVAAEKPSDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGHITDDRVLFSAACYA AKVTLTALGELFQAARDIMGWLGDCAKVIASEDQPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTA VACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24120		PDE319, SCA3	SCABRA 3, PIGMENT DEFECTIVE 31...		Potri.006G181100 [exp]	0	1
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	1.41	0.9230
AT4G12750			Homeodomain-like transcription...		Potri.014G173300 [exp]	3.00	0.9228
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.010G245000 [exp]	4.24	0.8936
AT5G46460			Pentatricopeptide repeat (PPR)...		Potri.001G354400 [exp]	7.07	0.8990
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	8.48	0.9012
AT1G68990		MGP3	male gametophyte defective 3 (...		Potri.010G136700 [exp]	9.05	0.8504
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	11.66	0.8941
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	12.48	0.8982
AT5G18390			Pentatricopeptide repeat (PPR)...		Potri.019G025700 [exp]	12.68	0.8974
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.004G227800 [exp]	13.26	0.8911

Compare expression of checked genes

Potri.006G181100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.