Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24130 1184 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G47570 461 / 3e-146 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 440 / 3e-138 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 438 / 1e-137 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 434 / 8e-136 EFR EF-TU receptor (.1) AT3G47580 431 / 9e-135 Leucine-rich repeat protein kinase family protein (.1) AT2G26330 388 / 4e-119 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 372 / 2e-111 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G28440 365 / 1e-110 HSL1 HAESA-like 1 (.1) AT5G07180 361 / 4e-109 ERL2 ERECTA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103400 [exp] 1596 / 0 AT2G24130 1170 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G042500 [exp] 783 / 0 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G184100 [exp] 769 / 0 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G030800 [exp] 541 / 9e-177 AT3G47570 576 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G020900 [exp] 535 / 6e-174 AT3G47570 593 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G031300 [exp] 530 / 2e-172 AT3G47570 574 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G060100 [exp] 525 / 1e-170 AT3G47570 670 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 515 / 2e-166 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G037400 [exp] 515 / 3e-166 AT3G47570 622 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010772 [exp] 1018 / 0 AT2G24130 928 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10004388 [exp] 514 / 3e-162 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 490 / 6e-157 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 489 / 4e-155 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 484 / 8e-155 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 484 / 9e-155 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 481 / 1e-153 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 480 / 1e-153 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 473 / 2e-150 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 472 / 3e-150 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G181200.1 pacid=42769723 polypeptide=Potri.006G181200.1.p locus=Potri.006G181200 ID=Potri.006G181200.1.v4.1 annot-version=v4.1 ATGGGTGCTTGTAAACTCTCCATGTTTAGTTTCCTTTGTTTGATCATTATTTTGGTAGTGGTTTCTGGGGAAGAAAGTCCCCAGCTTGTTAAGGATAGAA TTTCATTGCTTTCTTTCAGGTCAGGTATTGTATTAGACCCTGAAGGTGCACTTGAGAGCTGGAACTCTTCAAGCAATCACGTTTGCCACTGGACAGGAGT CAAGTGCGACAATGCTAGTGATCGCGTCATACAGCTTGACCTTAGTGGCCTGTCACTTCACGGCAGGATTTCTCCGATTCTTGCGAATCTTTCTTCTTTG CTGGTTCTTGATTTGTCAAGGAACTTCTTTGAAGGCCATATTCCAGCAGAGTTGGGCTATCTTTTCCAGTTAAGACAGCTCAGTTTATCATGGAATCTTC TCGGAGGAAACATTCCCGAGGAGTTGGGATTTCTTCACCAATTAGTATATCTTGATTTGGGAAGTAACAGGCTTGCTGGTGATATTCCTGCGCCGCTTTT CTGCAATGGGTCCTCTTCTTTGGAGTATATGGACCTTTCTAACAATTCTTTAACTGGAAAAATCCCTTTGAAGAATGAATGTGAGCTTAGTGCTTTGAGG TTTCTTTTGCTTTGGTCGAATAGACTAGTCGGTCGGGTCCCTCGAGCCCTTTCTAAGTCCACCAATCTTAAATGGCTCGATTTGGAGTCAAATATGCTGA CTGGGGAATTGCCATCAGAGATTGTACGTAAAATGCCAAAGTTACAGTTCCTGTATTTGTCTTACAATGACTTCGTTAGCCATGATGGTAACACCAATCT TGAGCCCTTTTTTGCTTCTTTAGTGAATTCTTCTGACCTTCAAGAACTTGAATTAGCCGGAAATAACCTTCGCGGAGAGATACCTCCTATTATCGGTAAT CTTTCTACCAATTTTGTACAGATTCATCTAGATGAGAATCTTCTTTATGGCTCTATCCCTCCTCACATTGCAAACCTTGTCAATCTCACCCTCTTAAACT TGTCTAGTAACCTTTTGAATGGTACCATCCCCCTAGAACTATGTCGTATGGGAAAACTAGAGAGGGTTTATTTGTCAAACAATTCACTATCTGGTGAAAT TCCAGCAGCTCTTGCTAACATTTCCCACTTGGGGCTTCTTGACTTATCAAAAAACAAACTTACAGGCCCCATCCCAGACAGTTTTGCCAACCTTTCACAG CTACGGAGACTCTTACTTTATGAAAATCAGCTCTCAGGAACCATACCACCAAGCTTGGGACAATGTGTCAATTTGGAGATCCTAGACCTTTCTAGAAATA CGATTTCTGGGATAATTCCTAGTGAAGTTGCAGGACTCAAGAGCTTGAAGTTGTATTTGAATCTGTCAAGCAATCACTTGCATGGTCCTTTACCACTAGA GCTAAGTAAAATGGACATGGTGCTAGCAATCGATCTATCTTCCAACAATCTGTCTGGCTCGATCCCGCCACAACTTGGAAGCTGCATTGCACTAGAGCAT CTTAACCTTTCAGGGAACGTCTTAGAAGGTCTTCTTCCAGCTACAATAGGACAGTTACCCTATCTTAAGGAACTGGATGTATCTTCAAACCAATTGAGTG GCAATATACCACAATCTCTGGAGGCATCACCAACTCTCAAGCATCTCAACTTCTCTTTCAACAAGTTCTCTGGAAACACATCAAACAAGGGGGCATTTTC TTCTCTGACGATAGATTCTTTCCTAGGCAATGAAGGCCTTTGCGGTGAAATAAAGGGCATGCCCAACTGCCGGAGGAAACATGCTCATCATTCACTTGTT TTACCTGTCCTCCTGTCTTTGTTTGCTACTACCTTATTATGCATATTTGCATACCCCCTCGCTCTCAGGTCAAAATTCAGAAGGCAAATGGTGATATTCA ATCGAGGTGACTTGGAAGATGAGGACAAAGAAACGAAAGACCTCAAGCATCCAAGAATCTCATATCGACAGCTCATTGAAGCTACAGGGGGGTTTAGCGC TTCAAGCCTGATAGGTTCAGGCCAATTTGGCCATGTCTACAAGGGAGTTCTTCAAGACAACACAAGGATAGCTGTTAAGGTATTGGATACAAAGACAGCT GGAGAAATTTCAGGGAGCTTCAAAAGAGAATGCCAAGTCCTAAAAAGAGCCAAACACAGAAATTTGATCAAGATCATCACAATATGCAGCAAGCCAGATT TTAAGGCTCTTGTCCTTCCTCTCATGTCAAATGGGAGCCTGGAAAGGCATTTATACCCGAGTCATGGACTAAATACAGGGTTGGATTTGATTCAGTTGGT GAGCATATGTAATGATGTGGCTGAAGGGGTGGCCTATTTGCACCATTATTCTCCTGTTAGAGTAGTTCACTGTGATCTCAAGCCAAGCAATATTCTTCTA GATGAAGACATGACAGCTTTGGTAACTGATTTTGGAATCGCAAGATTGATTAAAGGTGCTGATGACAGTAATCCAACAGATGATTCAGTGTCCTTTAGCT CAACTGATGGATTGCTGTGTGGATCTGTCGGCTACATTGCCCCTGAATACGGAATGGGAAAGCGAGCTTCAACGCAAGGAGATGTTTACAGTTTTGGAGT CCTCCTGCTAGAAATTATAACCGGAAGGCGCCCCACAGATGTTCTATTTCATGAAGGTTCAAGCTTGCATGGATGGATTAAGAGCCACTATCCCCACAAC GTCAAGCCCATAGTTGATCAAGCAGTGCTTAGGTTTGCTCCATCTGGCATGCCGGTATACTGTAACAAAATATGGAGTGATGTAATCTTGGAATTGATTG AGCTTGGTCTTATTTGCACTCAAAACAATCCTTCAACAAGACCAAGCATGCTAGAAGTAGCCAACGAAATGGGCAGCCTAAAGCAGTATCTCTCTAGTCC TCCCCCCCTGCTGATTGACGAAGCATATCCTAAGGCCGGTGCTTAA
AA sequence Show only first row Show all	>Potri.006G181200.1 pacid=42769723 polypeptide=Potri.006G181200.1.p locus=Potri.006G181200 ID=Potri.006G181200.1.v4.1 annot-version=v4.1 MGACKLSMFSFLCLIIILVVVSGEESPQLVKDRISLLSFRSGIVLDPEGALESWNSSSNHVCHWTGVKCDNASDRVIQLDLSGLSLHGRISPILANLSSL LVLDLSRNFFEGHIPAELGYLFQLRQLSLSWNLLGGNIPEELGFLHQLVYLDLGSNRLAGDIPAPLFCNGSSSLEYMDLSNNSLTGKIPLKNECELSALR FLLLWSNRLVGRVPRALSKSTNLKWLDLESNMLTGELPSEIVRKMPKLQFLYLSYNDFVSHDGNTNLEPFFASLVNSSDLQELELAGNNLRGEIPPIIGN LSTNFVQIHLDENLLYGSIPPHIANLVNLTLLNLSSNLLNGTIPLELCRMGKLERVYLSNNSLSGEIPAALANISHLGLLDLSKNKLTGPIPDSFANLSQ LRRLLLYENQLSGTIPPSLGQCVNLEILDLSRNTISGIIPSEVAGLKSLKLYLNLSSNHLHGPLPLELSKMDMVLAIDLSSNNLSGSIPPQLGSCIALEH LNLSGNVLEGLLPATIGQLPYLKELDVSSNQLSGNIPQSLEASPTLKHLNFSFNKFSGNTSNKGAFSSLTIDSFLGNEGLCGEIKGMPNCRRKHAHHSLV LPVLLSLFATTLLCIFAYPLALRSKFRRQMVIFNRGDLEDEDKETKDLKHPRISYRQLIEATGGFSASSLIGSGQFGHVYKGVLQDNTRIAVKVLDTKTA GEISGSFKRECQVLKRAKHRNLIKIITICSKPDFKALVLPLMSNGSLERHLYPSHGLNTGLDLIQLVSICNDVAEGVAYLHHYSPVRVVHCDLKPSNILL DEDMTALVTDFGIARLIKGADDSNPTDDSVSFSSTDGLLCGSVGYIAPEYGMGKRASTQGDVYSFGVLLLEIITGRRPTDVLFHEGSSLHGWIKSHYPHN VKPIVDQAVLRFAPSGMPVYCNKIWSDVILELIELGLICTQNNPSTRPSMLEVANEMGSLKQYLSSPPPLLIDEAYPKAGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24130			Leucine-rich receptor-like pro...		Potri.006G181200 [exp]	0	1
AT2G47810	CCAAT	NF-YB5	"nuclear factor Y, subunit B5"...		Potri.014G132600 [exp]	1.41	0.9722
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.010G064000 [exp]	2.23	0.9487	Pt-MYB305.2
AT2G46150			Late embryogenesis abundant (L...		Potri.002G165100 [exp]	2.44	0.9683
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Potri.017G099500 [exp]	2.82	0.9527
AT3G24310	MYB	MYB305, ATMYB71	MYB DOMAIN PROTEIN 71, myb dom...		Potri.008G173400 [exp]	3.00	0.9562	Pt-MYB305.1
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040132 [exp]	3.46	0.9360
AT5G19875			unknown protein		Potri.001G009200 [exp]	4.24	0.9284
AT5G43580		UPI	UNUSUAL SERINE PROTEASE INHIBI...		Potri.010G075600 [exp]	6.32	0.9252
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111800 [exp]	6.32	0.9291
AT5G02070			Protein kinase family protein ...		Potri.005G021300 [exp]	6.48	0.9354

Compare expression of checked genes

Potri.006G181200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.