Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42740 320 / 1e-113 RPL16A ribosomal protein large subunit 16A (.1) AT5G45775 320 / 2e-113 Ribosomal L5P family protein (.1.2) AT4G18730 320 / 2e-113 RPL16B ribosomal protein L16B (.1) AT3G58700 320 / 2e-113 Ribosomal L5P family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068900 [exp] 329 / 5e-117 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.006G181600 [exp] 329 / 5e-117 AT5G45775 320 / 1e-113 Ribosomal L5P family protein (.1.2) Potri.011G069200 [exp] 327 / 2e-116 AT2G42740 318 / 1e-112 ribosomal protein large subunit 16A (.1) Potri.002G109701 [exp] 108 / 2e-31 AT2G42740 127 / 5e-39 ribosomal protein large subunit 16A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033607 [exp] 325 / 2e-115 AT2G42740 362 / 7e-130 ribosomal protein large subunit 16A (.1) Lus10020715 [exp] 319 / 4e-113 AT2G42740 359 / 5e-129 ribosomal protein large subunit 16A (.1) Lus10029824 [exp] 307 / 3e-108 AT2G42740 347 / 5e-124 ribosomal protein large subunit 16A (.1) Lus10017648 [exp] 306 / 3e-108 AT2G42740 343 / 1e-122 ribosomal protein large subunit 16A (.1) Lus10007915 [exp] 52 / 4e-08 AT4G01310 364 / 3e-128 Ribosomal L5P family protein (.1) Lus10036390 [exp] 52 / 6e-08 AT4G01310 349 / 1e-121 Ribosomal L5P family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00673 [poplar] [flax] Ribosomal_L5_C ribosomal L5P family C-terminus
Representative CDS sequence Show only first row Show all	>Potri.006G181501.1 pacid=42767824 polypeptide=Potri.006G181501.1.p locus=Potri.006G181501 ID=Potri.006G181501.1.v4.1 annot-version=v4.1 ATGGCTTCAGAGAAGAAACTATCGAACCCAATGAGAGAGATCAAGGTCCAGAAGTTGGTCCTCAACATCTCTGTCGGCGAGAGTGGTGATCGCCTCACCC GTGCCGCCAAGGTCCTTGAACAGCTTAGTGGCCAAACACCAGTCTTCTCGAAGGCTAGGTATACTGTGAGATCTTTTGGGATCAGGCGTAACGAGAAGAT TGCTTGCTATGTCACTGTGAGGGGAGACAAGGCTATGCAGTTGCTGGAAAGTGGGTTGAAGGTGAAGGAGTATGAGCTTTTGAGAAGGAACTTCAGTGAT ACTGGTTGCTTCGGATTCGGTATTCAGGAGCACATTGATCTTGGCATCAAGTATGACCCTTCTACAGGTATTTATGGCATGGACTTCTATGTTGTTTTGG AACGTCCTGGATACCGTGTTGGCCGTCGTCGTAGGTGCAAGAGTCGTGTTGGAATTCACCAGAGAGTTACAAAGGACGACGCAATGAAGTGGTTCCAAGT CAAGTATGAAGGAGTCATACTTAACAAGTCCCAAAATATTTGA
AA sequence Show only first row Show all	>Potri.006G181501.1 pacid=42767824 polypeptide=Potri.006G181501.1.p locus=Potri.006G181501 ID=Potri.006G181501.1.v4.1 annot-version=v4.1 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSD TGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKSRVGIHQRVTKDDAMKWFQVKYEGVILNKSQNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45775			Ribosomal L5P family protein (...		Potri.006G181501 [exp]	0	1
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	2.82	0.9076	RPS13.4
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.015G147500 [exp]	5.91	0.8784
AT3G04400		EMB2171	embryo defective 2171, Ribosom...		Potri.010G066400 [exp]	6.00	0.8939	Pt-RPL23.6
AT5G23290		PFD5, PDF5	prefoldin 5 (.1)		Potri.007G074042 [exp]	9.38	0.8457
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.001G311000 [exp]	13.41	0.8419
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	13.41	0.8289
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	16.12	0.8864	RPL35.2
AT2G18110			Translation elongation factor...		Potri.012G096400 [exp]	17.34	0.8031	Pt-EEF1.2
AT2G21060		ATCSP4, ATGRP2B	COLD SHOCK DOMAIN PROTEIN 4, g...		Potri.004G172600 [exp]	17.43	0.8087	Pt-GRP2.3
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.013G128600 [exp]	20.34	0.8337

Compare expression of checked genes

Potri.006G181501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.