Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30710 274 / 3e-83 QWRF8 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G24070 253 / 7e-76 QWRF4 QWRF domain containing 4, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT3G19570 207 / 2e-58 SCO3, QWRF1 SNOWY COTYLEDON 3, QWRF domain containing 1, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT1G49890 199 / 2e-55 QWRF2 QWRF domain containing 2, Family of unknown function (DUF566) (.1) AT5G43160 160 / 7e-45 QWRF9 QWRF domain containing 9, Family of unknown function (DUF566) (.1) AT2G44190 133 / 4e-33 EMB3116, EDE1, QWRF5 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) AT4G30740 122 / 4e-33 unknown protein AT3G60000 124 / 2e-30 QWRF6 QWRF domain containing 6, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT2G20815 113 / 2e-26 QWRF3 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) AT4G25190 104 / 6e-24 QWRF7 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G103800 [exp] 887 / 0 AT4G30710 261 / 2e-78 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.001G295800 [exp] 220 / 3e-63 AT1G49890 526 / 4e-180 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.014G017500 [exp] 210 / 2e-59 AT1G49890 282 / 8e-86 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.009G089800 [exp] 202 / 1e-56 AT1G49890 516 / 4e-176 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.002G119500 [exp] 195 / 5e-54 AT1G49890 380 / 2e-123 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Potri.006G000400 [exp] 139 / 3e-35 AT2G44190 220 / 2e-66 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.016G000300 [exp] 131 / 9e-33 AT2G44190 226 / 1e-68 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Potri.001G126000 [exp] 121 / 1e-29 AT4G25190 225 / 4e-70 QWRF domain containing 7, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Potri.013G146100 [exp] 106 / 9e-24 AT2G20815 218 / 1e-63 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022176 [exp] 449 / 1e-150 AT4G30710 408 / 1e-134 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010780 [exp] 443 / 7e-150 AT4G30710 398 / 5e-132 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10010779 [exp] 393 / 5e-129 AT4G30710 355 / 3e-114 QWRF domain containing 8, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2) Lus10014636 [exp] 220 / 2e-64 AT1G49890 529 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10033792 [exp] 221 / 2e-63 AT1G49890 587 / 0.0 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10018698 [exp] 200 / 7e-56 AT1G49890 346 / 4e-110 QWRF domain containing 2, Family of unknown function (DUF566) (.1) Lus10007759 [exp] 138 / 1e-37 AT5G43160 157 / 5e-48 QWRF domain containing 9, Family of unknown function (DUF566) (.1) Lus10038729 [exp] 142 / 4e-36 AT2G44190 261 / 2e-81 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10039129 [exp] 141 / 9e-36 AT2G44190 268 / 6e-84 QWRF domain containing 5, EMBRYO DEFECTIVE 3116, ENDOSPERM DEFECTIVE 1, Family of unknown function (DUF566) (.1) Lus10018555 [exp] 110 / 4e-25 AT2G20815 222 / 1e-65 QWRF domain containing 3, Family of unknown function (DUF566) (.1), Family of unknown function (DUF566) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04484 [poplar] [flax] QWRF QWRF family
Representative CDS sequence Show only first row Show all	>Potri.006G181700.7 pacid=42770452 polypeptide=Potri.006G181700.7.p locus=Potri.006G181700 ID=Potri.006G181700.7.v4.1 annot-version=v4.1 ATGAGCAATTTGTGTGATTCCTTTCAATGTGAGAAGCACACAGCAGTTCTTGATAAACCAAGACCTCCCTTGGTTTCAGCTGAAAGAAACAGCAATGCAA CCGCAGCAGCAGCCACCCGCCGTCCTCGGACGAGGGAAGTTAGTTCCAGGTACAAATCATCCTCTCCAACAACACCTTCTGTTGCTAGGCGTTTCCCGTC ACCAAGCCTCACTAGAACATTGCCTACACCTTCCCAAGTGTTGCCTAAAAGATCTCAATCGGCCGAGAGGAGGCGCCCTTCATTTCCACCTTCACCCCCA AACCCCTCCACACCGGTTCAAGATTCATCAGTAGATGTGCAATTTCCATCTAGAAGGCTAAGTTCCGGTGGCCGGTTACAAGAGAGTTTATGGCCTTCTA CAATGAGAAGTCTTAGTGTTTCATTTCAATCAGATAGTATTTCTATTCCTATCAGTAAGAAGGAAAAACCAGTTAATAATGTCACCTCCGATCGAACATT GAGGCCTTCTTCAAATGTAGTTCATAAGCAGGCCGAAATGCCTACTGGGTCCCGAAAGCCTACACCAGAGAGAAAGAGGAGTCCTCTTAAAGGGAAGAAT TCGCAGGATCAATCAGAGAACTCTAAACCAGTGGATGGCTTACATTCTAGATTGATTGATCAGCATCGATGGCCTAGTAGGATAGGTGGGAAGGTATCTT CGAATACATCATTGAATAGAAGTGTGGATCTCACTGATAAGAGTGTGAAATCTTTGTCAACTCCAGTTGGAGTTGGATTATCTTCACTCAGGAGAACTCC CACACCTGATAGTGTAATAAAACCTTTACAAGTTTCTGCTAGTGATACTGCGAGGATATCGCTAGAAGAAATTGGCATAGTGTCTGAGGTGAATTCAGTT GGTGATAAATTGCAGCGGATAGCTGGGGCTCAGAAACTTGTTGCATCAAGTTTATCGGACAGAATATCATTGGCAAGTCCTGCAGTTAGATCTCAGTCCT TGCCAACTCCTGGATCGCGTCCTGCATCACCAAGTAGGAATTGCATTAGTAGAGGTGTAAGTCCAGCACGGACAAGACCATCTACTCCTCCTACAGGGGT TAGCCCATCTCGGATAAGGCTATCAAGTGTCTCCAGTCAATTCAATAATTCTACTTCTGTGCTTAGTTTTATAGCGGATTTTAAAAAGGGGAAAAAGGGT GCAAGCTATATTGAAGATGCTCATCAGATACGACTTCTATACAACAGATATTTGCAGTGGAGATTTGCTAATGCCCGGGCAGGGGCTGTTCTTTACTTTC AGAAGGTGACCGCCGAGAGAACCTTATACAACGTTTGGGACACCACTTTAGCTTTGTGGGATTCGGTAATCAGGAAGAGGATCAATCTCCAAAAGCTAAA ATTGGAGCTCAAACTGAATGCAGTATTGACTGATCAAATCGCCTACCTTGATGATTGGGCTTTACTTGAGAAAGATCATATTGATTCTTTATCTGGGGCT GTGGAAGATCTGGAGGCAAGCACTCTTCGTCTTCCAGTGACTGGTGGGGCAAAGGCAGATATAGAATCTTTGAAGGTTGCTATTTGCTCAGCTGTTGATG TGATGCAGGCAATGGGATCTTCCATATGTTCTTTACTTCCAAGAGTGGAGGGGATGAATGCTTTGGTTTATGAGCTCGCCATTGTTGCAGCACAAGAGAA AGCCAAGCTTGATCAATGTGAAGCTCTATTGGCGTCAACAACAGCTATGCAGGTAGAGGAGTACAGCATTAGGACTCATCGTATACAAACGAAAGAAGCT CTGGAGAAGCAACCACCACCACTCATGGCCATGAAAACACCTTCATGGCCCTGA
AA sequence Show only first row Show all	>Potri.006G181700.7 pacid=42770452 polypeptide=Potri.006G181700.7.p locus=Potri.006G181700 ID=Potri.006G181700.7.v4.1 annot-version=v4.1 MSNLCDSFQCEKHTAVLDKPRPPLVSAERNSNATAAAATRRPRTREVSSRYKSSSPTTPSVARRFPSPSLTRTLPTPSQVLPKRSQSAERRRPSFPPSPP NPSTPVQDSSVDVQFPSRRLSSGGRLQESLWPSTMRSLSVSFQSDSISIPISKKEKPVNNVTSDRTLRPSSNVVHKQAEMPTGSRKPTPERKRSPLKGKN SQDQSENSKPVDGLHSRLIDQHRWPSRIGGKVSSNTSLNRSVDLTDKSVKSLSTPVGVGLSSLRRTPTPDSVIKPLQVSASDTARISLEEIGIVSEVNSV GDKLQRIAGAQKLVASSLSDRISLASPAVRSQSLPTPGSRPASPSRNCISRGVSPARTRPSTPPTGVSPSRIRLSSVSSQFNNSTSVLSFIADFKKGKKG ASYIEDAHQIRLLYNRYLQWRFANARAGAVLYFQKVTAERTLYNVWDTTLALWDSVIRKRINLQKLKLELKLNAVLTDQIAYLDDWALLEKDHIDSLSGA VEDLEASTLRLPVTGGAKADIESLKVAICSAVDVMQAMGSSICSLLPRVEGMNALVYELAIVAAQEKAKLDQCEALLASTTAMQVEEYSIRTHRIQTKEA LEKQPPPLMAMKTPSWP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Potri.006G181700 [exp]	0	1
AT3G48880			RNI-like superfamily protein (...		Potri.012G137700 [exp]	14.56	0.6665
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Potri.002G016300 [exp]	29.39	0.6658	Pt-SMT1.1
AT1G03440			Leucine-rich repeat (LRR) fami...		Potri.014G136100 [exp]	49.12	0.7276
AT1G52770			Phototropic-responsive NPH3 fa...		Potri.001G175400 [exp]	59.11	0.6626
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	111.98	0.7080
AT5G49690			UDP-Glycosyltransferase superf...		Potri.010G182575 [exp]	122.51	0.6723
AT3G07120			RING/U-box superfamily protein...		Potri.002G243800 [exp]	159.05	0.6973
AT3G03790			ankyrin repeat family protein ...		Potri.013G055300 [exp]	165.98	0.6507
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Potri.002G084100 [exp]	168.00	0.6706	Pt-LACS9.3

Compare expression of checked genes

Potri.006G181700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.