Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30700 1025 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 574 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 517 / 4e-172 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 507 / 8e-168 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 490 / 7e-164 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11460 488 / 2e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 483 / 7e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 484 / 2e-160 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 482 / 2e-160 MEF22 mitochondrial editing factor 22 (.1) AT2G27610 486 / 1e-159 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G191000 [exp] 586 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 549 / 0 AT3G22690 582 / 0.0 unknown protein Potri.013G152000 [exp] 526 / 7e-177 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.001G322100 [exp] 513 / 8e-173 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 515 / 1e-171 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G128900 [exp] 505 / 2e-169 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 501 / 1e-167 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G220300 [exp] 500 / 5e-167 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G164900 [exp] 495 / 7e-164 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035815 [exp] 1132 / 0 AT4G30700 1026 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 593 / 0 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 539 / 3e-180 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10019735 [exp] 529 / 6e-177 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 521 / 7e-174 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10001220 [exp] 503 / 4e-166 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 494 / 3e-165 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 497 / 1e-163 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 489 / 2e-160 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035788 [exp] 478 / 3e-157 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G181800.1 pacid=42768924 polypeptide=Potri.006G181800.1.p locus=Potri.006G181800 ID=Potri.006G181800.1.v4.1 annot-version=v4.1 ATGTCTCTCCCAAAAACCATACTAGCATCATTGACAGTAGCTAAAACTTGCTATTACATACCTCGTACCCGCGATTTCTTTCTCAATCTCCTCAGAAAAG CTGCCACCCTCTCTCACTTAACCCAACTCCAAGCCCAGCTAATCCACCACAGCCTCCTCCTAAACGACATTTCGATCGCCACCAAACTCACCCACAAATT CTTCGACTTCAATGCCACTCTCCACGCTCGTGCACTCTTTTTCTCCGTCCCGAAACCGGACCTTTTCCTCTTTAACGTTCTCATTAAAGGCTTCTCCACC AATAACAAGCCTTTGTCGGCGATTTCTCTGTTTACCCATTTGAGAAAAAGCACTCGTTTAAAGCCCGATGATTATAGTTATGCTTTCGTTGTATCGGCTG CGGCGAGTCTTGGGGATGCTAGAATTGGTGGGATATTACATGGAAAGGCAATAATTGATGGGTTTGGTTTGGATTTGTTTGTTGGGTCTGCCCTTGTCGA CTTTTATTTTAAAATTTGGCGGGAAAATTTAGCTATTAAGGTGTTTGATAGATTGCCTCAAATAGATACTGTTTTGTATAATACAATGATATCTGGGTTT GTTAAGAATTCTTGTTTCGAGGACTCAATTAGAGTTTTTGGAGATATGGTTTTGGGTAATGGGCCCAGGTTTGATTTAACTACAGTTATAGCTGTTTTAC CTGCTGTGGCTGAGTTACAAGAGTTGAAATTAGGCATGCAAATTCTGTGTTTGGCTATAAAGTGTGGTTTCTATTCTCATGTTTCGTTGCTTACGGGCTT GATTTCGTTGTTCTCGAAATGCGGGGAAGTTGAGATTGCGAGGTTGTTGTTTGGGGAGATTCGTAAGAAAGACTTGATTTCTTGTAATGCAATGATTTCA GGGTTTACTTGCAATGGCGAGACTGAGGATTCGGTGAGGTTGTTCAAAGAACTGCTTAGTTCTGGAGAGAGAGTTAGTTCAAGTACTATTGTGGGGTTGA TTCCTGTGTATTCTCCTTTCGGTCATTCATATCTTTGTAATTGTATCCATGGTTTTTGTGTGAAACTTGGTATCGTTTCCCATTCTTCTGTTTCAACTGC ATTGACTACTGTTTATTGTAGATTGAATGAAATGATATTTGCAAGGCAACTTTTTGATGAATCAGCAGAGAAGACTTTAGCTTCTTGGAATGCAATGATC TCGGGTTGTACCCAAAATGGTTTAACAGATGCAGCAATCTCCCTTTTTCAGACGATGCAAAAAAATAATGTCAATCCAAATCCAGTTACTGTTACCAGCA TTCTTTCGGCTTGTGCTCAAATTGGAGCCTTAAGTCTTGGAGAATGGGTACACAGTTTAATTAAGAGCAATCGTTTTGAGTCCAATGTCTATGTTTCAAC GGCTCTGATTGACATGTATGCAAAGTGTGGGAGCATTACAGTAGCTAGGGAATTATTTGATCTGATGCCTGAGAAGAATGAGGTGACTTGGAACGCCATG ATTTCTGGTTATGGTCTCCATGGGCACGGGCAGGAAGCACTAAAGCTCTTTTACGATATGTTGTCTTCTTCTGTTAAACCCACTGGTCTCACTTTTCTCT CTGTATTGTATGCTTGCAGTCATGCTGGGTTAGTGAAAGAAGGAGATGGAATTTTTCACACTATGGTCCATGACTTCGGCTTTGAACCATTAGCCGAGCA TTATGCATGCATGGTTGATATCCTTGGACGAGCTGGACAATTGAAAAAGGCTTTGGAATTTATCAAGGCAATGCCCGTTGAGCCTGGTCCTCCCGTGTGG GGTGCCCTGCTTGGAGCTTGTATGATCCACAAGGACACAAACCTAGCTCATGTAGCTTCTGAAAAGTTATTTGAATTGGACCCAGAAAATATAGGATACT ATGTCTTAATGTCGAATATCTATTCAGTAGAGAGGAAATATCCACAAGCTGCTTCAGTAAGACAAGTAGCTAAGAAGAAAAGGCTAGCAAAGACTCCAGG CTGTACATTGATTGAGATTGGTCAGGTCCCACATGTCTTCACATCTGGTGACCAGTCCCATCCACAATCAAAGGCAATCTATGCAGAACTAGATAAATTG ACTGGAAAGATGACAGAGGCAGGATTCCAGACAGAGACTACCACTGTTTTGCATGATCTGGAGGAGGAAGAGAAGGAACTGACAATGAAGGTTCACAGTG AGAAGTTGGCCATTGCCTTTGGCCTTATCTCTACTGAACCTGGAGCTGAAATTAGGATTATCAAGAATCTCCGAGTTTGTTTAGACTGTCATAATTGGAC TAAGTTCTTGTCAAAGATCACAAAGAGAGTTATTGTGGTAAGGGATGCCAATAGATTCCATCACTTCAAAGATGGTCTCTGTTCATGTGGAGACTATTGG TGA
AA sequence Show only first row Show all	>Potri.006G181800.1 pacid=42768924 polypeptide=Potri.006G181800.1.p locus=Potri.006G181800 ID=Potri.006G181800.1.v4.1 annot-version=v4.1 MSLPKTILASLTVAKTCYYIPRTRDFFLNLLRKAATLSHLTQLQAQLIHHSLLLNDISIATKLTHKFFDFNATLHARALFFSVPKPDLFLFNVLIKGFST NNKPLSAISLFTHLRKSTRLKPDDYSYAFVVSAAASLGDARIGGILHGKAIIDGFGLDLFVGSALVDFYFKIWRENLAIKVFDRLPQIDTVLYNTMISGF VKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMIS GFTCNGETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMI SGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAM ISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVW GALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDKL TGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.006G181800 [exp]	0	1
AT1G49800			unknown protein		Potri.009G095600 [exp]	4.89	0.7746
AT1G08110			lactoylglutathione lyase famil...		Potri.004G214966 [exp]	16.97	0.7628
					Potri.001G241254 [exp]	23.40	0.6383
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G226904 [exp]	25.98	0.7653
AT5G19660		ATSBT6.1 ,ATS1P	SITE-1 protease (.1)		Potri.018G081400 [exp]	35.32	0.7277
AT1G21860		SKS7	SKU5 similar 7 (.1)		Potri.010G229500 [exp]	51.43	0.7351
AT5G43230			unknown protein		Potri.010G057700 [exp]	53.40	0.7287
AT2G34400			Pentatricopeptide repeat (PPR-...		Potri.018G144401 [exp]	57.82	0.7113
AT1G67570			Protein of unknown function (D...		Potri.008G178100 [exp]	59.98	0.7448
AT1G53400			Ubiquitin domain-containing pr...		Potri.001G387400 [exp]	71.58	0.7324

Compare expression of checked genes

Potri.006G181800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.