Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24060 252 / 2e-83 Translation initiation factor 3 protein (.1) AT4G30690 235 / 3e-77 Translation initiation factor 3 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104000 [exp] 330 / 2e-114 AT2G24060 278 / 2e-93 Translation initiation factor 3 protein (.1) Potri.009G137000 [exp] 49 / 2e-06 AT1G34360 182 / 8e-51 translation initiation factor 3 (IF-3) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036595 [exp] 242 / 9e-80 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1) Lus10035814 [exp] 241 / 3e-79 AT2G24060 268 / 4e-89 Translation initiation factor 3 protein (.1) Lus10032318 [exp] 42 / 0.0004 AT1G34360 142 / 4e-37 translation initiation factor 3 (IF-3) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00707 [poplar] [flax] IF3_C Translation initiation factor IF-3, C-terminal domain PF05198 [poplar] [flax] IF3_N Translation initiation factor IF-3, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G182000.4 pacid=42770257 polypeptide=Potri.006G182032.1.p locus=Potri.006G182000 ID=Potri.006G182000.4.v4.1 annot-version=v4.1 ATGGCTGGTATCACCAGCACTAGCGGCAGCAGCTGCTTCCCACTACTAACCCGTATCACCGCCACCAAGACGACACCCCTCGTCATCACCTCCCATTACG GTGGTCCACGGTCCTACGGTGACTCGCGGCGGCCGCGGAAGAGTGATTCTGATGAAGACCAGGCTCTTGATAAATCTAGAATCAGTTCAGCTACTGTGAG GCTCATTGATCAGCAACAGAATATGGTTGGTGTGGTATCTGGACGTGAGGCAATTCAAATGGCTGAAGATGCTGAGCTTGATTTGTTGTCACCAGATGCA GATCCTCCGGTTGTCAGGATAATGGATTACAACAAATTTAGATATGAACCGCAAAAGAAAAAGAGAGAACAGCAGAAGAAAAGTGCTGGTGAATGCCTCT TCTATTTTAGAGAGCTTAAAATGGGTTACAACATTGACCAACATGATTATGATGTGCGTTTAAGAGCTGCTCAGAATTTTTTGAAAGATGGTGACAAGGT TAAAGTCATAGTGAACTTGAATTGGCGTGAAAATGAGTTCAGAAATATTGCAATTGAGCTCATCAGACGTTTCCAAAATTTTGTTGGAGAGCTTGCTACT GAGGAGAGCAAAAACTTCCATGATAGGAACATATTCATTAGTCTGGTACCAAATAAGGCTATTCTACAGAAAGCTCTGGAACCGCCCAAGAAAAAGGACA AGTCAGCTGCAAATGAAGTATCAGCTGTTTGCCATTTTATAGGTCACATACCTAGGCAAGTAGTGTATTGCTCAAAGGAGACTGGATAA
AA sequence Show only first row Show all	>Potri.006G182000.4 pacid=42770257 polypeptide=Potri.006G182032.1.p locus=Potri.006G182000 ID=Potri.006G182000.4.v4.1 annot-version=v4.1 MAGITSTSGSSCFPLLTRITATKTTPLVITSHYGGPRSYGDSRRPRKSDSDEDQALDKSRISSATVRLIDQQQNMVGVVSGREAIQMAEDAELDLLSPDA DPPVVRIMDYNKFRYEPQKKKREQQKKSAGECLFYFRELKMGYNIDQHDYDVRLRAAQNFLKDGDKVKVIVNLNWRENEFRNIAIELIRRFQNFVGELAT EESKNFHDRNIFISLVPNKAILQKALEPPKKKDKSAANEVSAVCHFIGHIPRQVVYCSKETG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24060			Translation initiation factor ...		Potri.006G182000 [exp]	0	1
AT1G71910			unknown protein		Potri.013G114000 [exp]	3.00	0.8234
					Potri.002G193400 [exp]	6.63	0.8568
AT3G18380		SHH2	SAWADEE homeodomain homolog 2,...		Potri.001G373300 [exp]	10.00	0.8475
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.019G077200 [exp]	12.84	0.8382	AGL11.1
AT4G36790			Major facilitator superfamily ...		Potri.007G030800 [exp]	19.13	0.8341
AT1G50870			F-box and associated interacti...		Potri.019G062900 [exp]	25.45	0.7797
AT1G49960			Xanthine/uracil permease famil...		Potri.009G086800 [exp]	29.66	0.8171
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.018G112400 [exp]	29.81	0.8302	Pt-AHA6.3
AT5G44670			Domain of unknown function (DU...		Potri.003G156600 [exp]	34.01	0.8147
					Potri.003G083000 [exp]	34.46	0.8150

Compare expression of checked genes

Potri.006G182000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.