Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57870 884 / 0 eIFiso4G1 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) AT2G24050 742 / 0 eIFiso4G2 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) AT4G30680 215 / 3e-64 Initiation factor eIF-4 gamma, MA3 (.1) AT1G62410 192 / 2e-56 MIF4G domain-containing protein (.1) AT3G60240 184 / 1e-47 CUM2, EIF4G CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) AT1G56040 85 / 5e-17 HEAT/U-box domain-containing protein (.1) AT4G24800 63 / 5e-10 ECIP1 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) AT5G63190 55 / 2e-07 MA3 domain-containing protein (.1.2) AT1G22730 54 / 3e-07 MA3 domain-containing protein (.1) AT3G48390 52 / 1e-06 MA3 domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G104100 [exp] 1252 / 0 AT5G57870 882 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.018G017600 [exp] 931 / 0 AT5G57870 809 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.006G265300 [exp] 909 / 0 AT5G57870 790 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Potri.014G052600 [exp] 201 / 3e-53 AT3G60240 998 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.002G140200 [exp] 193 / 9e-51 AT3G60240 942 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Potri.015G088300 [exp] 57 / 3e-08 AT4G24800 1008 / 0.0 EIN2 C-terminus Interacting Protein 1, MA3 domain-containing protein (.1.2.3) Potri.005G199200 [exp] 56 / 1e-07 AT1G22730 828 / 0.0 MA3 domain-containing protein (.1) Potri.012G091900 [exp] 56 / 1e-07 AT5G63190 1022 / 0.0 MA3 domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022168 [exp] 1018 / 0 AT5G57870 976 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10010782 [exp] 1013 / 0 AT5G57870 952 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035813 [exp] 706 / 0 AT5G57870 654 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10036594 [exp] 701 / 0 AT5G57870 625 / 0.0 eukaryotic translation Initiation Factor isoform 4G1, MIF4G domain-containing protein / MA3 domain-containing protein (.1.2) Lus10035812 [exp] 254 / 8e-80 AT2G24050 228 / 3e-71 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10028156 [exp] 204 / 3e-54 AT3G60240 1275 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10042856 [exp] 204 / 3e-54 AT3G60240 970 / 0.0 CUCUMOVIRUS MULTIPLICATION 2, eukaryotic translation initiation factor 4G (.2.3.4) Lus10036256 [exp] 156 / 1e-41 AT2G24050 145 / 3e-38 eukaryotic translation Initiation Factor isoform 4G2, MIF4G domain-containing protein / MA3 domain-containing protein (.1) Lus10012205 [exp] 54 / 4e-07 AT1G22730 560 / 0.0 MA3 domain-containing protein (.1) Lus10011324 [exp] 54 / 4e-07 AT1G22730 816 / 0.0 MA3 domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF02854 [poplar] [flax] MIF4G MIF4G domain
Representative CDS sequence Show only first row Show all	>Potri.006G182100.1 pacid=42766967 polypeptide=Potri.006G182100.1.p locus=Potri.006G182100 ID=Potri.006G182100.1.v4.1 annot-version=v4.1 ATGCAGCAAGGTGATCAGACGGTGTTAAGCTTAAGACCTGGTGGCGGTCGAGGGAGTAGACTCTTCAATCCTCGCTTGGAGCAGTCATCATCTTCTTCTT CTACATCTTCCTCCATTTCTCTTGGTGATCTCCCTCACTTGCGTCCTCGTGGCGGTGCTCCTTTTCTGAAGACTGGAGACTTGCGGTTCGAGGGTCGTGA CCATGTGCAGTACACTAGAGACCAGCTGTTGCAGCTTAGAGAGGCTATTGTAATCTCTGATGAGATTCTAAAAATCAAACAAGAAATTGAAGCTGAGTTT TTTGGCGAAGATCAGAGCTGGAGTCGTGGAGAAACCAATCCTCCAACTCAATCTCAGAGTCGTTATTCTGAGCCAGACAATCGTGATTGGCGTGGTCGTT ATGCACATGCTCAATTTTCTCCATCTGGAGAGGAGAGGTCCTGGGATTCTAATCGAGAAAATCGGGACTTTGGTGGGAGATATGACTCCAGGCAGCAAGA AGGCAATCAGTCTAATCGTCAAGACCAACTCAACTCCCAATTTTCGAGAGCACAACTCTCTTCTAATCAGGGAGGACCTGCTCCTGCTTTGATCAAGGCT GAGGCGCCATGGTCTGCCAGAAGGGAAAATCTTTCAGAGAAGGACCGTGTCTTGAAGACTGTAAAAGGTATACTGAACAAGCTTACCCCTGAGAAGTTTG ATGTTCTCAAGGGTCAACTTATCAACTCTGGAATTACATCAGCTGATATCTTAAAGGGTGTGATATCACTTATATTCGATAAGGCTGTTCTGGAACCCAC ATTCTGTTTCATGTATGCACAGCTGTGCTCTGATCTTAATGAAAAGCTCCCCCAATTTCCATCAGATGAACCTGGTGGGAAAGATATCACATTTAAGCGG GTACTCTTAAATATCTGTCAGGAGGCATTTGAGGGTGCTGATAAACTGAGGGAGGAAGTAAGGCAGATGACAGGTCCAGAGCAAGAGCTTGAGCGTAGGG ATAAGGAAAGACTGGTCAAGCTTCGCACTCTTGGAAACATCCGTTTGATTGGAGAGCTTTTGAAGCAGAAAATGGTTCCTGAAAAGATTGTCCATCATAT TGTTCAGGAGCTTCTAGGGCATGATAATAAAGTTTGTCCTGCTGAAGAAAATGTTGAGGCCACATGTCAGTTCTTTAACACCATTGGTAAGCAGCTTGAT GAGAGCCCAAGGTCACGGCATATAAATGATGTGTACTTTGGTCAATTGAAGGAACTGTCATCAAAACCCCAGTTGGCTCCTCGACTGAGGTTCATTGTTC AAGATGTTCTTGATCTGCGGATGAACAACTGGATTCCCAGGCGTGAAGAGATCAAAGCTAAAACCATCACAGAGATACATGCTGAGGCAGAAAAGAATCT TGGGCTGCGTCCAGGTGCTGCCGCAAGCATTAGAAATAACCGAGGTGTTATTTCTGCTGCTTCAGGGACTGCTGGCCCTGGGGACTTCCCCATCAACCGA CCTGGCACTGGGGGCATGATGCCTGGCATGCCAGGAGCTAGGAGAATGCCTGGGATGCCTGGAATTGATAATGACAATTGGGGGGCACCTAGAAACCATT CAATGCCAAGGGGTGATGGTCTAATGCAGCCTGCTGGACGTCTCCAATCACCAAGTTTTAACAAGTCAAGGTCAGTAAACACGAAGCTGTTACCTCAGGG CAGTGGTGGTTTTATGAGTGGAAAGAGTAGTGCCCCCTTGCAGGGACGTGGTGGTCCTCCATCTAGGCCATCTAACTTTCATTTTGGTGCAGAGCCTCCT GCTCAAGCCCCTATACCTAGTAAAACTCTTCCTGCCCCTTATGTGCCTCCAGTTGCAGATAGACCAGTTGTTCCAGCTTCCAGGGTGAATCCTGATGAAC TTAGGAGAAAGACTCTCTCGCTCCTGAAAGAATATTTCAGTGTCTTGCTTCTGGATGAGGCATTGCAATGTGTGGAAGAGCTGAAGTCTCCAGCTTACCA CCCTGAAGTTGTCAAGGAAGCTATCTCCATTGCATTAGAGGCAAATCCACCACGAGTTGAACCAGTTTCCAAACTTCTGGAATATTTGTTTGCCAAGAAG GTCATCACAGTGAAAGACATAGGAACTGGGTGCTTACTATATGGTTCTATGTTGGATGATATTGGCATTGATTTGCCAAAGGCACCATATAATTTTGGTG AAATTACCGGGAAATTAGTTTTGGTGGGGGGATTGGACTTCAAAGTGGTAATAGAGGTCCTTAAGAAGATGGAGGATGATATGTACCAGAGAGCTGTATT TGATGCAGCAACAAGGATCATTAGTTCAAGTCCGGATGGGCAACTTGTATTAGATACTCAAGCATCCGATATTAAGGCTTGCCAGAGTTTATTTTAG
AA sequence Show only first row Show all	>Potri.006G182100.1 pacid=42766967 polypeptide=Potri.006G182100.1.p locus=Potri.006G182100 ID=Potri.006G182100.1.v4.1 annot-version=v4.1 MQQGDQTVLSLRPGGGRGSRLFNPRLEQSSSSSSTSSSISLGDLPHLRPRGGAPFLKTGDLRFEGRDHVQYTRDQLLQLREAIVISDEILKIKQEIEAEF FGEDQSWSRGETNPPTQSQSRYSEPDNRDWRGRYAHAQFSPSGEERSWDSNRENRDFGGRYDSRQQEGNQSNRQDQLNSQFSRAQLSSNQGGPAPALIKA EAPWSARRENLSEKDRVLKTVKGILNKLTPEKFDVLKGQLINSGITSADILKGVISLIFDKAVLEPTFCFMYAQLCSDLNEKLPQFPSDEPGGKDITFKR VLLNICQEAFEGADKLREEVRQMTGPEQELERRDKERLVKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGHDNKVCPAEENVEATCQFFNTIGKQLD ESPRSRHINDVYFGQLKELSSKPQLAPRLRFIVQDVLDLRMNNWIPRREEIKAKTITEIHAEAEKNLGLRPGAAASIRNNRGVISAASGTAGPGDFPINR PGTGGMMPGMPGARRMPGMPGIDNDNWGAPRNHSMPRGDGLMQPAGRLQSPSFNKSRSVNTKLLPQGSGGFMSGKSSAPLQGRGGPPSRPSNFHFGAEPP AQAPIPSKTLPAPYVPPVADRPVVPASRVNPDELRRKTLSLLKEYFSVLLLDEALQCVEELKSPAYHPEVVKEAISIALEANPPRVEPVSKLLEYLFAKK VITVKDIGTGCLLYGSMLDDIGIDLPKAPYNFGEITGKLVLVGGLDFKVVIEVLKKMEDDMYQRAVFDAATRIISSSPDGQLVLDTQASDIKACQSLF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Potri.006G182100 [exp]	0	1
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.007G065000 [exp]	3.46	0.8866
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	14.83	0.8990
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.003G178700 [exp]	18.30	0.8895
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	18.76	0.8959	Pt-SUBI.8
AT1G04910			O-fucosyltransferase family pr...		Potri.017G057300 [exp]	18.97	0.8662
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.008G149700 [exp]	21.90	0.8092
AT5G42120			Concanavalin A-like lectin pro...		Potri.005G189500 [exp]	26.32	0.8757
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.003G082700 [exp]	28.46	0.8703
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.004G157100 [exp]	29.08	0.8765	APL3.1
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	30.85	0.8829

Compare expression of checked genes

Potri.006G182100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.