Plant FIBer expression Database

Potri.006G182301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57880 234 / 5e-77 MPS1, ATPRD2 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 2, multipolar spindle 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010784
[exp]
216 / 8e-70 AT5G57880 334 / 8e-113 ARABIDOPSIS THALIANA PUTATIVE RECOMBINATION INITIATION DEFECTS 2, multipolar spindle 1 (.1)
PFAM info
Representative CDS sequence
>Potri.006G182301.1 pacid=42769218 polypeptide=Potri.006G182301.1.p locus=Potri.006G182301 ID=Potri.006G182301.1.v4.1 annot-version=v4.1
ATGGAGCTCATTGAAGGAATTGTCAGTCGCTTAATTGTGCGTTTAGTTAAAAGGATGTGTTCCCCTTCACATGGAGATGAGTCACGTCAAACTGACACTG
ACACCCAGTTCTATATTCAACAATTGATCCGCAAGCTTGGATGTGAACCTCACATTGGGCAGCGAGCAATACTTTCAGTTTCTCAGAGAATTTCCATGGT
AGCAGAAAATTTGTTATTCTTGGATCCATTCGATGAGGCCTTTTCAAACATGCATGAGTGCTTGTTCATAATGATCCAGCTTATTGAGTTTTTGATATCA
GACTACTTGTTAACTTGGTCGAGGGACGAGGGCTTTGACCATGTGCTGTTTGAAGAGTGGGTGACCTCAGTTCTCCATGCTCGTAAAGCATTAGAACTTC
TTGAGAGCAGAAATGGGCTTTATGTTTTGTACATGGATCGAGTCACAGGTGAACTGGCTAAACATGTGGGCCAGGTTTCATCATTTCAGAAACTCAGCCA
AGATATTCTTGACAATCTATTCTGCTGA
AA sequence
>Potri.006G182301.1 pacid=42769218 polypeptide=Potri.006G182301.1.p locus=Potri.006G182301 ID=Potri.006G182301.1.v4.1 annot-version=v4.1
MELIEGIVSRLIVRLVKRMCSPSHGDESRQTDTDTQFYIQQLIRKLGCEPHIGQRAILSVSQRISMVAENLLFLDPFDEAFSNMHECLFIMIQLIEFLIS
DYLLTWSRDEGFDHVLFEEWVTSVLHARKALELLESRNGLYVLYMDRVTGELAKHVGQVSSFQKLSQDILDNLFC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57880 MPS1, ATPRD2 ARABIDOPSIS THALIANA PUTATIVE ... Potri.006G182301
[exp]
0 1
AT2G13350 Calcium-dependent lipid-bindin... Potri.010G065300
[exp]
6.00 0.7521
AT2G41050 PQ-loop repeat family protein ... Potri.006G025100
[exp]
9.05 0.7175
AT1G63640 P-loop nucleoside triphosphate... Potri.003G127800
[exp]
23.40 0.7984
AT1G04730 CTF18 CHROMOSOME TRANSMISSION FIDELI... Potri.001G050300
[exp]
33.98 0.7879

Potri.006G182301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.