Plant FIBer expression Database

Potri.006G182601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G24030 64 / 7e-11 zinc ion binding;nucleic acid binding (.1.2)
AT5G61190 42 / 0.0007 C2H2ZnF putative endonuclease or glycosyl hydrolase with C2H2-type zinc finger domain (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G078500
[exp]
62 / 6e-10 AT1G74520 104 / 6e-26 HVA22 homologue A (.1)
Potri.001G283000
[exp]
59 / 6e-09 AT1G74520 98 / 1e-23 HVA22 homologue A (.1)
Potri.005G152100
[exp]
56 / 3e-08 AT1G69700 102 / 1e-25 HVA22 homologue C (.1)
Potri.017G139000
[exp]
49 / 6e-06 AT1G74520 119 / 5e-32 HVA22 homologue A (.1)
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF12874 zf-met Zinc-finger of C2H2 type
Representative CDS sequence
>Potri.006G182601.1 pacid=42769485 polypeptide=Potri.006G182601.1.p locus=Potri.006G182601 ID=Potri.006G182601.1.v4.1 annot-version=v4.1
ATGGAGTTCAAGTTTCGAGCTGGAGACAACAGGCCACCGGTATGCTTCTCCCCGTCATCTAGTATCGGTTATTTTTACGAACAAGCATTGCGAGCTTCCT
ATCCAAACGCTGATCCGCGACAAATTCCCGAGCCAATGCGAAACGAGTTGTTCCTGCGCCGAATCGAGAAGGAGCGTATCAGAGAGGAAATAATTGCACA
AGAAATGGCGTGGCGACAAGAGCTGGAAGCGGAGGTGAGGAGGGAGTTGATGGTGGAAAGAGAAATGGCAATGCGAGGAGGACGAGGGATGTCTTTTGAA
GAAAGATTGACAATGCAGTTTGATTCGAGGAAGCCTCTGCTGCCGGGTCCTTTCGTGAACCAATTTGATTGTAGCTGGCCCGAAGATCGTTTAGCATTTC
ACGGTCATGGGGTGTCTTATATGTTGCCGCCGGTGCCAAGGCTACCAGAGTCAGAGATGAAACCTTCAACGGAAAATAACAAGGATAAAGTAATCGTGCT
GAAGAAACCGGATCCAAATCTTTGTGGAGCGAAGAGGAAGGCTGTAACACCAGCTGCAGAAAGTGTTGGTGAACTTCCTTTTGCTGGTATAAAGAAGAAA
CCCAAGGAAGAATGGAGTTGTGCCCTATGTCAGGTTAGTGCTACAAGTGAGAGAGGTTTGAATGAACACCTTCAAGGCAGAAGGCACAAGGCCAAGGAAG
CAGGATTGAGAGCCCAGAAGATGGCGAGGAATCCCAATAAAGCATCATTGCCAAAGGAAACCACAAAGACAGCTAAGGTAACCATCCCCACTGCAGGCTT
AGAAATGGAGGCAAAAATCGAAGATGAATCACTTCAACTTAACAAGAGTGATAACTTTTCAAACAAGAAAATTGAGAATAAGGAAGAGAGAGGGAATAGA
AACGATGTGCAATTAGAGCAGAAAAATCAGCAACTGGAGGACTTGAACAAAAGTATGGCAGAAGCAGTTCAGACAAAGGAGAGGACACCGGAGATTAAGA
TGAAAAAGAAATTTAAGTTCTGGTGTGAAATGTGCCAGATTGGAGCCTACTCTGAAATGGTGATGGAGGCTCATAAGAAAGGGAAGAAACACCTGGCTCG
GCTTCAGAAATCTAGTCAAAACGGTGAAGCTGTACAGGCTGATAAGAAGGCAAAAGATTCAGAAGTTGCGGTTAAAGAAACTGAAGATTCAGAATTTGTG
GCTGAAAGAGCAACTGATTCAGGACTCGCCGCAAGGGGAACAGACACAGAGAGAACAGAAACTACTGTTGCAAATGCAGATGAACAACGTCCACCTTCTA
CAATAACAATGGAGAAAGAAGGGGTGCATCAGTCAGAAATAATAAGCAACCAAGAGAAGATGAGCAAGTGA
AA sequence
>Potri.006G182601.1 pacid=42769485 polypeptide=Potri.006G182601.1.p locus=Potri.006G182601 ID=Potri.006G182601.1.v4.1 annot-version=v4.1
MEFKFRAGDNRPPVCFSPSSSIGYFYEQALRASYPNADPRQIPEPMRNELFLRRIEKERIREEIIAQEMAWRQELEAEVRRELMVEREMAMRGGRGMSFE
ERLTMQFDSRKPLLPGPFVNQFDCSWPEDRLAFHGHGVSYMLPPVPRLPESEMKPSTENNKDKVIVLKKPDPNLCGAKRKAVTPAAESVGELPFAGIKKK
PKEEWSCALCQVSATSERGLNEHLQGRRHKAKEAGLRAQKMARNPNKASLPKETTKTAKVTIPTAGLEMEAKIEDESLQLNKSDNFSNKKIENKEERGNR
NDVQLEQKNQQLEDLNKSMAEAVQTKERTPEIKMKKKFKFWCEMCQIGAYSEMVMEAHKKGKKHLARLQKSSQNGEAVQADKKAKDSEVAVKETEDSEFV
AERATDSGLAARGTDTERTETTVANADEQRPPSTITMEKEGVHQSEIISNQEKMSK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G24030 zinc ion binding;nucleic acid ... Potri.006G182601
[exp]
0 1
AT3G21215 RNA-binding (RRM/RBD/RNP motif... Potri.010G249700
[exp]
1.41 0.8647
AT3G62330 Zinc knuckle (CCHC-type) famil... Potri.014G118100
[exp]
1.73 0.8821
AT3G49430 SRP34A, SR34a, ... Serine/Arginine-Rich Protein S... Potri.015G004600
[exp]
6.00 0.7707
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.008G080300
[exp]
6.32 0.7611 Pt-HUA1.1
Potri.010G058600
[exp]
8.71 0.7984
AT4G19150 Ankyrin repeat family protein ... Potri.003G103400
[exp]
12.24 0.7514
AT5G07900 Mitochondrial transcription te... Potri.001G034600
[exp]
12.96 0.7889
AT5G09995 unknown protein Potri.007G081800
[exp]
16.73 0.7941
AT5G60790 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL C... Potri.004G214300
[exp]
16.91 0.7591 Pt-PNATH.2
AT5G23390 Plant protein of unknown funct... Potri.008G003000
[exp]
19.44 0.7347

Potri.006G182601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.