Plant FIBer expression Database

Potri.006G183101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G105401
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G183101.1 pacid=42770258 polypeptide=Potri.006G183101.1.p locus=Potri.006G183101 ID=Potri.006G183101.1.v4.1 annot-version=v4.1
AAATGTTGTCCTCCAACCAAACCCACCTCACCTCACAGACCCATAATTCAGTATGCCAGAAATACCCTTCTGCAACCCCCCAAAAAATCCCATCTTCATC
ACTGTCTCATGTCTCAAAAGAACACATATTTTTCACCGAATTATGTGGGCTTCTTTGGGTTTTCTTTGTCTTGGTCAGAGTTTCACAGGGAAAACAGGAA
AGCAAGAACCTTCCCATTCCTCTCTCTATCTCTCATCTCTCTTCACTACCCTCACCCTTCTCGATCTCATCTTTCCTTTTATTATTTCTTGCCCATCCCT
AA sequence
>Potri.006G183101.1 pacid=42770258 polypeptide=Potri.006G183101.1.p locus=Potri.006G183101 ID=Potri.006G183101.1.v4.1 annot-version=v4.1
KCCPPTKPTSPHRPIIQYARNTLLQPPKKSHLHHCLMSQKNTYFSPNYVGFFGFSLSWSEFHRENRKARTFPFLSLSLISLHYPHPSRSHLSFYYFLPIP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G183101
[exp]
0 1
AT2G40095 Alpha/beta hydrolase related p... Potri.010G189600
[exp]
11.74 0.8041
AT1G13960 WRKY WRKY4 WRKY DNA-binding protein 4 (.1... Potri.010G163000
[exp]
13.78 0.8034 Pt-WRKY3.2
AT1G19860 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G236300
[exp]
18.81 0.6829
AT3G29400 ATEXO70E1 exocyst subunit exo70 family p... Potri.017G093966
[exp]
20.92 0.7885
AT2G02220 ATPSKR1 phytosulfokin receptor 1 (.1) Potri.001G310700
[exp]
45.00 0.6984
AT3G26040 HXXXD-type acyl-transferase fa... Potri.004G017666
[exp]
50.91 0.7431
AT3G48990 AMP-dependent synthetase and l... Potri.001G105900
[exp]
57.35 0.7443
AT1G74190 AtRLP15 receptor like protein 15 (.1) Potri.005G013800
[exp]
63.52 0.7435
AT1G66930 Protein kinase superfamily pro... Potri.017G117400
[exp]
66.48 0.7351
AT5G52390 PAR1 protein (.1) Potri.012G141800
[exp]
85.65 0.6806

Potri.006G183101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.