Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	BRS1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30610 739 / 0 SCPL24, BRS1 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) AT2G24000 643 / 0 SCPL22 serine carboxypeptidase-like 22 (.1.2) AT2G24010 619 / 0 SCPL23 serine carboxypeptidase-like 23 (.1) AT3G02110 611 / 0 SCPL25 serine carboxypeptidase-like 25 (.1) AT2G35780 541 / 0 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G07990 534 / 0 SCPL27 serine carboxypeptidase-like 27 (.1) AT4G30810 489 / 5e-171 SCPL29 serine carboxypeptidase-like 29 (.1) AT5G23210 474 / 5e-165 SCPL34 serine carboxypeptidase-like 34 (.1.2.3.4) AT2G35770 463 / 4e-161 SCPL28 serine carboxypeptidase-like 28 (.1) AT3G63470 461 / 2e-159 SCPL40 serine carboxypeptidase-like 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G105700 [exp] 839 / 0 AT4G30610 710 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.017G094100 [exp] 632 / 0 AT3G02110 758 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.004G120100 [exp] 627 / 0 AT3G02110 755 / 0.0 serine carboxypeptidase-like 25 (.1) Potri.008G041800 [exp] 551 / 0 AT3G07990 736 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.010G220100 [exp] 547 / 0 AT3G07990 735 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.008G041700 [exp] 513 / 1e-180 AT2G35770 608 / 0.0 serine carboxypeptidase-like 28 (.1) Potri.010G220200 [exp] 504 / 4e-177 AT3G07990 600 / 0.0 serine carboxypeptidase-like 27 (.1) Potri.018G103100 [exp] 489 / 3e-171 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.005G091700 [exp] 483 / 1e-168 AT5G23210 652 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015489 [exp] 752 / 0 AT4G30610 726 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10019954 [exp] 748 / 0 AT4G30610 720 / 0.0 SERINE CARBOXYPEPTIDASE 24 PRECURSOR, BRI1 SUPPRESSOR 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10015382 [exp] 609 / 0 AT3G02110 731 / 0.0 serine carboxypeptidase-like 25 (.1) Lus10023505 [exp] 542 / 0 AT3G07990 717 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10040387 [exp] 539 / 0 AT3G07990 715 / 0.0 serine carboxypeptidase-like 27 (.1) Lus10041412 [exp] 492 / 2e-171 AT2G35770 580 / 0.0 serine carboxypeptidase-like 28 (.1) Lus10010190 [exp] 474 / 7e-165 AT5G23210 647 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10017391 [exp] 472 / 4e-164 AT5G23210 642 / 0.0 serine carboxypeptidase-like 34 (.1.2.3.4) Lus10011213 [exp] 441 / 4e-152 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2) Lus10018467 [exp] 433 / 6e-149 AT1G11080 669 / 0.0 serine carboxypeptidase-like 31 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF00450 [poplar] [flax] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Potri.006G183200.1 pacid=42770039 polypeptide=Potri.006G183200.1.p locus=Potri.006G183200 ID=Potri.006G183200.1.v4.1 annot-version=v4.1 ATGGCAGTTCAAACAAAATCCCATCTCTTGATCTTGTCCTTGCTTCTCGTATCTTCACTCACCACCACCATTGTTGCTTTGAATAGACAGCAAGAACTAG ATCGAATCTCAGCTCTCCCTGGTCAACCAGCAGTCACGTTTTCACAGTTTTCTGGCTATGTTACTGTCAATGAGAAACATGGGCGTGCACTCTTTTACTG GTTGACAGAAGCTACAGCAATTCCTGACAAGAAACCTCTCGTTCTTTGGCTCAATGGAGGACCAGGTTGTTCATCAGTGGCATATGGAGCATCAGAAGAA ATCGGACCGTTTCGGATAAACAGAACTGGTTTATCTCTTTATATGAACAAATATTCATGGAATAAAGAAGCAAATATTCTTTTCCTGGAGTCACCAGCTG GTGTGGGATTCTCATACACAAACACAAGCTCTAATCTTAAAGATTCTGGCGACAAAAGGACAGCTCAAGATGCTCTGGTTTTTCTTACAAGATGGATGTC CAGATTTCCTCAATACAAATATAGAGAATTCTATATTGCTGGTGAAAGTTATGCAGGGCATTATGTTCCCCAGTTGGCAAAGAAAATCCATGATTATAAT AAAGCATATCCACATCCCATCATCAATCTCAAAGGATTCATTGTGGGAAATGCAGTCACGGATAACTACTATGATAGCATAGGAACTGTTGCATTTTGGT GGACGCATTCAATGATATCGGATCGGACTTATCGAGCAATTCTTGATAATTGCAATTTCACGGAAGACACAGCCTCTAACCAATGTGATGATGCTGTGAC TTATGCAATGAACCATGAATTTGGGGATATTGATCAATACAGCATTTATACACCATCTTGTATGCAACTGCCAAACAGTACTGTAAGGCTGAAAAATACT CTGCTGCGCAGAAGGGTCTCTGGTTATGATCCATGTACTGAGAAATATGCAGAAAAATACTATAATCGACCTGAAGTGCAGAAGGCAATGCATGCTAATG TTACTGGAATTCCTTACAAATGGACTGCTTGCAGCGATGTTCTTATTAAAAACTGGAAGGATTCTGAATCTTCTATGTTACCCGTATACAAGGATCTAAT TGCAGCTGGTTTAAGAATCTGGGTTTTCAGTGGTGATACAGATTCGGTGGTTCCAGTGACTGCCACCAGGTTTTCCCTCAGCCACCTTAATCTCACTGTT AAAACCAGGTGGTATCCTTGGTATTCAGGAGACCAGGTTGGAGGATGGACAGAAGTTTACAAGGGGCTAACCTTTGCAACTGTGAGAGGAGCAGGCCATG AAGTTCCCTTATTTCAACCTAGAAGAGCTTTCATTCTTTTCAGATCATTCTTAGCTGGAGAGGAATTACCCAAATCTTGA
AA sequence Show only first row Show all	>Potri.006G183200.1 pacid=42770039 polypeptide=Potri.006G183200.1.p locus=Potri.006G183200 ID=Potri.006G183200.1.v4.1 annot-version=v4.1 MAVQTKSHLLILSLLLVSSLTTTIVALNRQQELDRISALPGQPAVTFSQFSGYVTVNEKHGRALFYWLTEATAIPDKKPLVLWLNGGPGCSSVAYGASEE IGPFRINRTGLSLYMNKYSWNKEANILFLESPAGVGFSYTNTSSNLKDSGDKRTAQDALVFLTRWMSRFPQYKYREFYIAGESYAGHYVPQLAKKIHDYN KAYPHPIINLKGFIVGNAVTDNYYDSIGTVAFWWTHSMISDRTYRAILDNCNFTEDTASNQCDDAVTYAMNHEFGDIDQYSIYTPSCMQLPNSTVRLKNT LLRRRVSGYDPCTEKYAEKYYNRPEVQKAMHANVTGIPYKWTACSDVLIKNWKDSESSMLPVYKDLIAAGLRIWVFSGDTDSVVPVTATRFSLSHLNLTV KTRWYPWYSGDQVGGWTEVYKGLTFATVRGAGHEVPLFQPRRAFILFRSFLAGEELPKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30610		SCPL24, BRS1	SERINE CARBOXYPEPTIDASE 24 PRE...		Potri.006G183200 [exp]	0	1	BRS1.2
AT1G32780			GroES-like zinc-binding dehydr...		Potri.011G152900 [exp]	4.89	0.9501
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G062000 [exp]	4.89	0.9428
AT1G78850			D-mannose binding lectin prote...		Potri.011G110000 [exp]	8.30	0.9580
					Potri.008G210250 [exp]	9.53	0.9341
AT4G26590		ATOPT5	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.001G369700 [exp]	10.48	0.9357
AT5G18470			Curculin-like (mannose-binding...		Potri.013G050500 [exp]	20.73	0.9175
AT5G37690			SGNH hydrolase-type esterase s...		Potri.017G130100 [exp]	26.87	0.9203
AT5G19600		SULTR3;5	sulfate transporter 3;5 (.1)		Potri.006G156038 [exp]	29.39	0.9368
AT3G01930			Major facilitator superfamily ...		Potri.001G329100 [exp]	34.27	0.8750
AT1G78850			D-mannose binding lectin prote...		Potri.011G110500 [exp]	34.40	0.9323

Compare expression of checked genes

Potri.006G183200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.