Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30580 387 / 2e-134 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) AT1G80950 52 / 3e-07 Phospholipid/glycerol acyltransferase family protein (.1) AT1G78690 44 / 0.0001 Phospholipid/glycerol acyltransferase family protein (.1) AT3G05510 42 / 0.0004 Phospholipid/glycerol acyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138900 [exp] 72 / 6e-14 AT4G30580 73 / 2e-14 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 46 / 3e-05 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1) Potri.014G042200 [exp] 45 / 4e-05 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.004G183300 [exp] 42 / 0.0005 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.009G143200 [exp] 42 / 0.0007 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036259 [exp] 404 / 9e-141 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10022158 [exp] 385 / 3e-132 AT4G30580 331 / 5e-111 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10003950 [exp] 46 / 3e-05 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10032706 [exp] 46 / 3e-05 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10020650 [exp] 45 / 0.0001 AT3G05510 438 / 1e-150 Phospholipid/glycerol acyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF01553 [poplar] [flax] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G183700.1 pacid=42769828 polypeptide=Potri.006G183700.1.p locus=Potri.006G183700 ID=Potri.006G183700.1.v4.1 annot-version=v4.1 ATGTTAAACAATAATAATACAATGGAAATGGTTGCTTCTCTATCTCACCCTTTCCATTGCCCCCTTCGTCTCCGGTATAAACGATCGAGCAATATTTCTC CACCGTCTCTGTTGCAGTTCCGTGCTTGTAAAGAACCATTTGTTGGGTGCTCTACATATAAACAAGCTGTACTGTGGAATTCATATAACTCTACTCTAAA TGGTGCATCCTGCATTCCAAGGAAACATGTCTGTGTACCATGGTATAATTATTTACAGGAGTTCAATCAAACAATGGTCCATAAACAAGCTAAAGCTTCC AGACCTGTAGTTGTAAGATCGGAACTTGCTGGAACTGGGATCCCAGATTCTGCCTATCCATTATCAGATATTACCTTTGGGTCAAAAGTTAGAGGAATAG GCTTTTATGTTGTTACTGCTATTGCTGCCATTTTCCTTATTGTGCTGATGATAGCACAACATCCGTTCGTGCTCTTATTTGATCAATACCGAAGAAAAGC TCAATTTTCCATTGCCAAAATTTGGGCATCACTGACTGTTGCTCCATTTTTTAAAATTGAGTATGAGAGATTGGAAAATCTACCCCCTCCAGATGTTCCT GCTGTATATGTTTCGAACCACCAGAGTTTTCTCGACATATATACTCTTCTTACTCTTGGCAGAAGCTTCAAGTTCATCAGTAAGACTGGGATATTTCTAT TTCCCATTATTGGGTGGGCTATGCTTATGTTGGGTGTCATTCCCTTGAAGCGCATGGACAGTAGAAGCCAAATGGAATGTCTCAAGCGTTGCATGGATCT ACTCAAGAAGGGGTCCTCTGTCTTTTTCTTCCCAGAGGGAACACGGAGTAAAGATGGAAAATTATGTGCTTTCAAGAAAGGTGCCTTCAGTGTTGCTGCA AAAGTTGGAGTGCCAGTGGTACCTATTACCCTGATTGGAACGGGGAAAATCATGCCCACAGGATTGGAGGGTATATTGAATCCAGGGTCTGTAAAAGTTA TTATTCATAAACCCATAGAAGGGAGTGATGCTGCAGTATTGTGCAATGAAGCTAGAAGTGCAATTGCAGACGCACTACAACATCAAGGCTGA
AA sequence Show only first row Show all	>Potri.006G183700.1 pacid=42769828 polypeptide=Potri.006G183700.1.p locus=Potri.006G183700 ID=Potri.006G183700.1.v4.1 annot-version=v4.1 MLNNNNTMEMVASLSHPFHCPLRLRYKRSSNISPPSLLQFRACKEPFVGCSTYKQAVLWNSYNSTLNGASCIPRKHVCVPWYNYLQEFNQTMVHKQAKAS RPVVVRSELAGTGIPDSAYPLSDITFGSKVRGIGFYVVTAIAAIFLIVLMIAQHPFVLLFDQYRRKAQFSIAKIWASLTVAPFFKIEYERLENLPPPDVP AVYVSNHQSFLDIYTLLTLGRSFKFISKTGIFLFPIIGWAMLMLGVIPLKRMDSRSQMECLKRCMDLLKKGSSVFFFPEGTRSKDGKLCAFKKGAFSVAA KVGVPVVPITLIGTGKIMPTGLEGILNPGSVKVIIHKPIEGSDAAVLCNEARSAIADALQHQG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30580		LPAT1, ATS2, EM...	lysophosphatidic acid acyltran...		Potri.006G183700 [exp]	0	1
					Potri.016G007450 [exp]	3.46	0.7556
AT1G16350			Aldolase-type TIM barrel famil...		Potri.008G082800 [exp]	9.16	0.7524
AT3G11110			RING/U-box superfamily protein...		Potri.008G071000 [exp]	16.55	0.7628
AT4G21705			Tetratricopeptide repeat (TPR)...		Potri.004G042500 [exp]	43.37	0.7197
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.009G022050 [exp]	48.37	0.6919
AT4G16060			unknown protein		Potri.010G006000 [exp]	48.43	0.7045
AT3G53440			Homeodomain-like superfamily p...		Potri.006G280800 [exp]	57.94	0.7280
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Potri.017G053500 [exp]	67.24	0.6802
AT3G52170			DNA binding (.1.2)		Potri.008G029500 [exp]	89.97	0.7061
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	114.69	0.6419

Compare expression of checked genes

Potri.006G183700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.