Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57930 517 / 0 APO2, EMB1629 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT1G64810 291 / 9e-94 APO1 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT5G61930 259 / 2e-82 APO3 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) AT3G21740 179 / 4e-52 APO4 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G106400 [exp] 729 / 0 AT5G57930 510 / 8e-180 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.016G001400 [exp] 290 / 1e-93 AT1G64810 535 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.015G106200 [exp] 266 / 9e-85 AT5G61930 500 / 3e-177 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Potri.017G037200 [exp] 180 / 1e-52 AT3G21740 384 / 5e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019959 [exp] 521 / 0 AT5G57930 521 / 0.0 embryo defective 1629, ACCUMULATION OF PHOTOSYSTEM ONE 2, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10038736 [exp] 275 / 7e-88 AT1G64810 562 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10039122 [exp] 270 / 4e-86 AT1G64810 567 / 0.0 ACCUMULATION OF PHOTOSYSTEM ONE 1, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10005547 [exp] 252 / 2e-79 AT5G61930 306 / 4e-101 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10041933 [exp] 243 / 4e-76 AT5G61930 304 / 2e-100 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10004105 [exp] 240 / 4e-75 AT5G61930 473 / 3e-167 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10013360 [exp] 249 / 2e-74 AT3G44160 574 / 0.0 Outer membrane OMP85 family protein (.1) Lus10039659 [exp] 196 / 1e-58 AT3G21740 385 / 4e-134 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1) Lus10041934 [exp] 142 / 2e-40 AT5G61930 162 / 4e-49 ACCUMULATION OF PHOTOSYSTEM ONE 3, Arabidopsis thaliana protein of unknown function (DUF794) (.1), Arabidopsis thaliana protein of unknown function (DUF794) (.2) Lus10027182 [exp] 119 / 2e-30 AT3G21740 240 / 4e-78 ACCUMULATION OF PHOTOSYSTEM ONE 4, Arabidopsis thaliana protein of unknown function (DUF794) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05634 [poplar] [flax] APO_RNA-bind APO RNA-binding
Representative CDS sequence Show only first row Show all	>Potri.006G183900.1 pacid=42769566 polypeptide=Potri.006G183900.1.p locus=Potri.006G183900 ID=Potri.006G183900.1.v4.1 annot-version=v4.1 ATGTTAGTTTCCTCTTCAGTTGCAACATGGACAGACTGTGGATCGTCTTCTAACTACCCTTTGTGCACCATGGCTTTTTTTCATTCTAAATTAAGGTCCT CCTTTCTCAGAATGGAACCCTTCACTGTTTCTTTTCTCCCAAGTTCAGAATTTCTCAAACTTAGCTCCTTCCATTCTTTTCAGCATAGTGATCTTAAACT TAGGCATTCATTCAAGTCTAGAACTACACCAAGGATGTTGCGTCAACCACATGAACTGGTTATCACAAACGAATATCCTCAAAATGCTGATTTTCCTCGG AATTATTCAAGAAAGGAGAAGAAGCCCTTTCCAATACCCATAGTTGAGTTGAGACGAGCTGCAAGGGAGAGGTTCAAGAAGAACAAAGGCCAACCTAAAG GACGTGCACCACCTCCAAAGAATGGTTTGCTCGTTCAATGCCTTGTGCCACTTGCTTATGATGTATTCAATGCAAGGATCACGTTAATTAACAATCTCAA GAAACTGTTAAAAGTGGTTCCTGTGCATGCTTGTGGATGGTGTAACGAGCTCCACGTGGGACCTGAAGGACATCCATTCAAGTCATGTAAAGGCAAACAT GCCACCCTCCGCAAGGGCCTTCATCAGTGGACAAATGCAGCTGTCGAAGATGTACTTGTGCCAATAGAAGCCTACCACCTTTATGATCCTCTTGGAAAAC GAATTAAACATGAGGAGAGATTTTCAATTCCCCGAATTCCTGCAGTAATGGAGCTCTGCATCCAAGCTGGTGTTTACGTTTCTGAATATCCAACAAAAAG GAGAAGAAAACCAATTATTCGCATCGGAAAAAGGGAATTTGTTGATGCAGATGAAAGTGACCTACCAGACCCTGTCCCAGAAGTTCCTCTAAAGCCACTA TTAACCGAATTACCCATCTCAGAAGCAGTAGCCCCAACTAATGAAGAAGAAAAAACCTTGCTTGCCGAGGAAACACTACAAGCATGGGAAAAGATGAGGA AAGGAGCCAAGAAGTTAATGCAGATGTACCGCGTCAGAGTTTGTGGATATTGCCCGGAGGTGCATGTGGGACATAGCGGACACAAGGCACAGAACTGTGG GGCCCACAAGCACCAACAACGGAACGGACAGCATGGTTGGCAGTCTGCTGTGCTTGATAACTTGATACCGCCCAGATATGTGTGGCATGTTCCTGATGTG GATGGGCCGCCATTGCGAAGGGAGCTGAGGAACTTCTATGGGCAAGCCCCTGCTGTTGTAGAAATTTGCGTTCAGGCTGGTGCTGCTGTACCAGACCAGT ACAAATCAACCATGAGGTTGGATATTGGGATCCCTTCCAGTGTTAAAGAGGCTGAAATGGTTGTTTAA
AA sequence Show only first row Show all	>Potri.006G183900.1 pacid=42769566 polypeptide=Potri.006G183900.1.p locus=Potri.006G183900 ID=Potri.006G183900.1.v4.1 annot-version=v4.1 MLVSSSVATWTDCGSSSNYPLCTMAFFHSKLRSSFLRMEPFTVSFLPSSEFLKLSSFHSFQHSDLKLRHSFKSRTTPRMLRQPHELVITNEYPQNADFPR NYSRKEKKPFPIPIVELRRAARERFKKNKGQPKGRAPPPKNGLLVQCLVPLAYDVFNARITLINNLKKLLKVVPVHACGWCNELHVGPEGHPFKSCKGKH ATLRKGLHQWTNAAVEDVLVPIEAYHLYDPLGKRIKHEERFSIPRIPAVMELCIQAGVYVSEYPTKRRRKPIIRIGKREFVDADESDLPDPVPEVPLKPL LTELPISEAVAPTNEEEKTLLAEETLQAWEKMRKGAKKLMQMYRVRVCGYCPEVHVGHSGHKAQNCGAHKHQQRNGQHGWQSAVLDNLIPPRYVWHVPDV DGPPLRRELRNFYGQAPAVVEICVQAGAAVPDQYKSTMRLDIGIPSSVKEAEMVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57930		APO2, EMB1629	embryo defective 1629, ACCUMUL...		Potri.006G183900 [exp]	0	1
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Potri.013G070500 [exp]	1.00	0.9953	Pt-SIGB.2
AT3G01440		PnsL3, PQL2, PQ...	PsbQ-like 2, Photosynthetic ND...		Potri.001G416400 [exp]	1.73	0.9838
AT5G52030			TraB family protein (.1.2)		Potri.012G133900 [exp]	2.23	0.9804
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	2.44	0.9842	RNP1.2
AT1G20810			FKBP-like peptidyl-prolyl cis-...		Potri.005G254900 [exp]	2.82	0.9834
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	3.46	0.9770
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Potri.006G060100 [exp]	5.91	0.9795
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.010G255500 [exp]	6.48	0.9796
AT5G01920		STN8	State transition 8, Protein ki...		Potri.006G109700 [exp]	6.92	0.9791
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.002G239700 [exp]	8.30	0.9720	Pt-PSAL.3

Compare expression of checked genes

Potri.006G183900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.