Plant FIBer expression Database

Potri.006G184500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30920 836 / 0 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
AT2G24200 814 / 0 Cytosol aminopeptidase family protein (.1.2.3)
AT4G30910 783 / 0 Cytosol aminopeptidase family protein (.1)
AT5G13940 77 / 2e-14 aminopeptidases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G106800
[exp]
971 / 0 AT4G30920 873 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036266
[exp]
800 / 0 AT4G30920 773 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10035823
[exp]
799 / 0 AT4G30920 776 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
Lus10022152
[exp]
687 / 0 AT4G30920 657 / 0.0 leucyl aminopeptidase 2, Cytosol aminopeptidase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF00883 Peptidase_M17 Cytosol aminopeptidase family, catalytic domain
CL0223 MACRO PF02789 Peptidase_M17_N Cytosol aminopeptidase family, N-terminal domain
Representative CDS sequence
>Potri.006G184500.2 pacid=42768103 polypeptide=Potri.006G184500.2.p locus=Potri.006G184500 ID=Potri.006G184500.2.v4.1 annot-version=v4.1
ATGGCTCACTCAGCTCGTGCCACTCTTGGCCTTACTCAGCCTGCTAACATCGATGTCCCTAAGATTGCTTTTTCTGCAAAAGAAATTGACGTGGCAGAAT
GGAAAGGGGATATACTTGCTGTTGGTGTTACAGAGAAAGATATGGCCAAGGATGACAGCAAGAAGTTCGAGAACTCTCTTTTGAAAAAGCTAGATGCTAA
GCTGGGTGGTCAATTAAGTGAAGCCTCTTCTGAGGAGGATTTCACAGGAAAACCTGGCCAGTCATTGGTTCTTAGACTTCCAGGTCTTGGTTCCAAAAGA
ATCGGCTTGATTGGCCTTGGACAGTCTGCAACAAACACATATAATTTTCGCAATTTTGGTGAGGCCATTGCGGCTGCTGCTAAGACTGCTCAAGCCAGTG
ATGTTGGCATTGTGCTTGCTTCAACTGGAAGCATCTCGAATGAATCAAAACTTAATACTGCTTCGGCGATAGTATCTGGGACTGTGCTGGGGACATATGA
AGATAATAGGTATAAGTCGGATTCAAAGAGACCTGTGCTTAAATCTGTGGATATTCTTGGTCTTGGAACTGGACCTGAGCTAGTGAAGAAGCTCAAATAT
GCTGAAGATGTTTCTTCTGCTGTAATTTTTGGAAAAGAGCTTGTCAATTCACCTGCCAATGTACTCACCCCTGCGGTACTGGCAGAAGAAGCTTCAAAGA
TTGCTTCCACATACAGCGATGTTCTTTCTGCTACCATCTTGAGTGCAGAGCAGTGCATAGAGTTGAAAATGGGATCCTATTTAGGTGTTGCTGCAGCTTC
TGCAAATCCTCCCCATTTCATCCATTTGTGTTATAAGCCTTCAAGTGGACCTGTTAAAGCCAAGTTAGCATTAGTTGGAAAAGGATTGACTTTTGACAGT
GGTGGCTACAACATCAAGACAGGACCTGGCTGTTCCATTGAGTTCATGAAATTTGATATGGGAGGTTCAGCAGCAGTTTTAGGTGCAGCTAAAGCCATTG
GTCAAGTTAAACCTCGTGGGGTTGAGGTCCATTTCATTGTTGCAGCTTGCGAGAATATGATCAGTGGAACTGGTATGAGGCCAGGAGATATAGTTACAGC
CTCTAATGGAAAGACAATTGAGGTGAACAACACTGATGCTGAAGGCAGACTTACACTTGCAGATGCTTTAGTTTATGCCTGTAACCAGGGTGTAGAGAAG
ATTATTGACTTGGCAACACTAACTGGAGCCTGTAGAGTTGCCCTCGGGCCCTCAATTGCAGGTGTTTTTACACCCAGTGATGAGTTGGCAAATGAGGTAT
TCACAGCAGCAGAGGCCAGCGGAGAGAAACTCTGGAGGATGCCATTAGAGGAAAGTTACTGGGAGTCCATGAAGTCAGGAGTAGCAGATATGGTAAACAC
TGGTGCTCGTCAGGGTGGTGCTATCACGGCAGCTCTGTTTTTGAAACAGTTTGTTGATGAGAAGGTTCAATGGATGCACATTGACATGGCTGGTCCTGTA
TCCAGTGAGAAGAAGCGCACCGCAACAGGATTTGGCATCCTAACCCTAGTAGAATGGGTCCAGCAACACTCTTCTTAG
AA sequence
>Potri.006G184500.2 pacid=42768103 polypeptide=Potri.006G184500.2.p locus=Potri.006G184500 ID=Potri.006G184500.2.v4.1 annot-version=v4.1
MAHSARATLGLTQPANIDVPKIAFSAKEIDVAEWKGDILAVGVTEKDMAKDDSKKFENSLLKKLDAKLGGQLSEASSEEDFTGKPGQSLVLRLPGLGSKR
IGLIGLGQSATNTYNFRNFGEAIAAAAKTAQASDVGIVLASTGSISNESKLNTASAIVSGTVLGTYEDNRYKSDSKRPVLKSVDILGLGTGPELVKKLKY
AEDVSSAVIFGKELVNSPANVLTPAVLAEEASKIASTYSDVLSATILSAEQCIELKMGSYLGVAAASANPPHFIHLCYKPSSGPVKAKLALVGKGLTFDS
GGYNIKTGPGCSIEFMKFDMGGSAAVLGAAKAIGQVKPRGVEVHFIVAACENMISGTGMRPGDIVTASNGKTIEVNNTDAEGRLTLADALVYACNQGVEK
IIDLATLTGACRVALGPSIAGVFTPSDELANEVFTAAEASGEKLWRMPLEESYWESMKSGVADMVNTGARQGGAITAALFLKQFVDEKVQWMHIDMAGPV
SSEKKRTATGFGILTLVEWVQQHSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30920 AtLAP2, LAP2 leucyl aminopeptidase 2, Cytos... Potri.006G184500
[exp]
0 1
AT2G34560 P-loop containing nucleoside t... Potri.004G065100
[exp]
1.00 0.9454
AT1G56230 Protein of unknown function (D... Potri.013G013000
[exp]
3.16 0.9231
Potri.001G466500
[exp]
3.16 0.9443
AT2G38430 unknown protein Potri.019G030050
[exp]
3.46 0.9357
AT1G32790 CID11 CTC-interacting domain 11 (.1.... Potri.001G448800
[exp]
4.89 0.9369
AT1G24450 NFD2 NUCLEAR FUSION DEFECTIVE 2, Ri... Potri.015G073900
[exp]
5.19 0.9047
AT4G14600 Target SNARE coiled-coil domai... Potri.002G102400
[exp]
5.65 0.9261
AT1G17280 UBC34 ubiquitin-conjugating enzyme 3... Potri.003G073100
[exp]
7.34 0.9301
AT5G19180 ECR1 E1 C-terminal related 1 (.1) Potri.008G204000
[exp]
8.30 0.9070 Pt-ECR1.1
AT5G61540 N-terminal nucleophile aminohy... Potri.014G191900
[exp]
8.48 0.9138

Potri.006G184500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.