Plant FIBer expression Database

Potri.006G184600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57950 284 / 8e-98 26S proteasome regulatory subunit, putative (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036267
[exp]
299 / 7e-104 AT5G57950 249 / 6e-84 26S proteasome regulatory subunit, putative (.1)
Lus10022151
[exp]
292 / 3e-101 AT5G57950 246 / 9e-83 26S proteasome regulatory subunit, putative (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0466 PDZ-like PF13180 PDZ_2 PDZ domain
Representative CDS sequence
>Potri.006G184600.1 pacid=42766898 polypeptide=Potri.006G184600.1.p locus=Potri.006G184600 ID=Potri.006G184600.1.v4.1 annot-version=v4.1
ATGGTGGGAGCGAACTTGAAAGCAGAAACAATGAAACTGATGGAGAAGAGAAGTGCTTTGGAAACTGAGATGAATGTCATCATCGACCGCCTCTGTCAGC
CTGGCGGTCCTGGTCTCTCCGGCAACCTCGTCGATTCTGAGGGTTTTCCTCGGTCGGATATTGATATTCCAGTCGTTAGAGCTGAACGACACCGTCTTGC
TGAGCTGCGGAATGATCATAAGGAGATTACAGAGAAAATAAATGAGAATATACAAGTTCTGCATTCAGCCAGGCTTGCAACCAAAGATTCAGTGGTTGGC
AATGCTGTTCCATCTGCAACTTCCCACAATGTTGTTCTTAGAGATTCTCCCAGTTCCATGGATGTGGACATGATGGCTAGCATACCCTTTGCTGTGGTTT
ATGAAATTGCCGATGCATCCCCAACGGCAGAGGATGGTCTGCAACTTGGAGATCAACTTGTTAAATTTGGTACTGTGGAATATCAAGTTGGTGAGAATCT
TTTGCAAAAGCTTGCTTCTGAGACTCAGGCAAATCAGGGTCATGCAGTACCAGTGATAGTTATGAGGCAAGGTGCTCCCATCAACTTATCAGTGACTCCT
AGAGTGTGGCCTGGCAGGGGTCTACTGGGATGCAGTTTCCGGATCTTATAA
AA sequence
>Potri.006G184600.1 pacid=42766898 polypeptide=Potri.006G184600.1.p locus=Potri.006G184600 ID=Potri.006G184600.1.v4.1 annot-version=v4.1
MVGANLKAETMKLMEKRSALETEMNVIIDRLCQPGGPGLSGNLVDSEGFPRSDIDIPVVRAERHRLAELRNDHKEITEKINENIQVLHSARLATKDSVVG
NAVPSATSHNVVLRDSPSSMDVDMMASIPFAVVYEIADASPTAEDGLQLGDQLVKFGTVEYQVGENLLQKLASETQANQGHAVPVIVMRQGAPINLSVTP
RVWPGRGLLGCSFRIL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G57950 26S proteasome regulatory subu... Potri.006G184600
[exp]
0 1
AT1G73030 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PR... Potri.006G158538
[exp]
3.00 0.8671
AT3G62450 unknown protein Potri.005G071700
[exp]
3.16 0.8353
AT1G73030 CHMP1A, VPS46.2 CHARGED MULTIVESICULAR BODY PR... Potri.001G194400
[exp]
4.89 0.8396
AT4G26240 unknown protein Potri.006G153800
[exp]
4.89 0.8673
AT5G14710 unknown protein Potri.001G349500
[exp]
5.47 0.8706
AT4G39100 SHL1 short life, PHD finger family ... Potri.004G159900
[exp]
7.48 0.8032
AT1G52740 HTA9 histone H2A protein 9 (.1) Potri.006G249400
[exp]
8.77 0.8441 HTA906
AT1G23260 MMZ1 ,UEV1A UBIQUITIN E2 VARIANT 1A, MMS Z... Potri.008G133900
[exp]
8.83 0.8551
AT5G64816 unknown protein Potri.002G105400
[exp]
9.94 0.8362
AT5G20920 EIF2 BETA, EMB1... embryo defective 1401, eukaryo... Potri.013G158400
[exp]
9.94 0.8351 Pt-EIF2.3

Potri.006G184600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.