Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30935 347 / 1e-114 WRKY ATWRKY32, WRKY32 WRKY DNA-binding protein 32 (.1) AT4G26640 179 / 5e-50 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT1G13960 177 / 2e-49 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT2G04880 167 / 7e-46 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT2G38470 166 / 3e-45 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 165 / 7e-45 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT5G07100 156 / 2e-43 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT2G30250 155 / 2e-42 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT4G26440 154 / 1e-40 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT3G01080 141 / 7e-37 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107000 [exp] 715 / 0 AT4G30935 373 / 1e-124 WRKY DNA-binding protein 32 (.1) Potri.004G120800 [exp] 181 / 2e-50 AT2G03340 358 / 5e-118 WRKY DNA-binding protein 3 (.1) Potri.006G264000 [exp] 178 / 6e-50 AT4G30935 171 / 1e-47 WRKY DNA-binding protein 32 (.1) Potri.011G087900 [exp] 177 / 6e-49 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.001G361600 [exp] 176 / 1e-48 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.019G123500 [exp] 176 / 3e-48 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 174 / 1e-47 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.014G164300 [exp] 171 / 3e-47 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.010G163000 [exp] 170 / 1e-46 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022150 [exp] 439 / 1e-149 AT4G30935 374 / 9e-125 WRKY DNA-binding protein 32 (.1) Lus10036268 [exp] 438 / 5e-149 AT4G30935 364 / 4e-121 WRKY DNA-binding protein 32 (.1) Lus10037131 [exp] 175 / 3e-49 AT2G03340 414 / 1e-141 WRKY DNA-binding protein 3 (.1) Lus10012322 [exp] 172 / 3e-48 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2) Lus10016595 [exp] 173 / 3e-47 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10006368 [exp] 170 / 1e-46 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10000173 [exp] 165 / 1e-46 AT2G03340 366 / 2e-124 WRKY DNA-binding protein 3 (.1) Lus10036800 [exp] 167 / 5e-46 AT2G03340 405 / 4e-138 WRKY DNA-binding protein 3 (.1) Lus10043167 [exp] 168 / 6e-46 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 166 / 6e-46 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G184800.2 pacid=42770103 polypeptide=Potri.006G184800.2.p locus=Potri.006G184800 ID=Potri.006G184800.2.v4.1 annot-version=v4.1 ATGGCAGGGAGTGAGAGCTTCGAAGCTCTCGAAGTGCAAAATAATGAACAGAAACGACAAGGAAATGAACAAAACAACGGTAATTTTGTAGAAGAAGAGG AATTAGAAGGCGATTATATTGAGGAGGAGGAGGAGAGTCAACTCAGTGAGTTGCAGCAACTTGTCGAGTTGCCGAGTTCGCAGGTGGAGGAGGAGATGAG GGATGGGCAAGTGGAAACCCTAACGGTGGTGCCGTCTTCTTCCACGGCGATACTATCGAAGGAGAATGATCAGCATGTAGGTTTGAAAGGAAATTCAGCA TTGAAAACGCACGTGGAAGCTGAATTCAAGGAGCAAGTAGGCTTGTCGCACCAGGAAGTTCTGGGAAGCGTAACAGCCCAGAGTGCTAAAGCCCAGACCC AAAATCAGCTTCCACCTTCTGCATGTCCAACTTCCTCGTCAGAACTGTCACTAACTTCTGTTACACAACCTATATCATCTGCTCCAAGTCCAACTCCACC AGAAAAAAGATTGTCTCCCCCAGAGGTTAAGAATGCATGTATACCAGAAGCAGGGCACCAAAGTTCTGCCAAGCTTAAGGCTCTCCATGTTCCTGTAGCA AGGACATCAATTCCAGATGGGTACAACTGGCGGAAATATGGTCAGAAGCAAGTGAAGAGCCCTAAAGGTTCTCGAAGTTATTACAAGTGTACTTATTCTG ACTGCTGTGCTAAAAAGATCGAATGTTCTGATCACTCAGGCCGTGTGATAGAGATTGTTAATAAAGGAATGCACAGTCATCCACCTCGGAAGAATAACAG CACTAGGGAAAGTAGGAGTGGATTATCTGTTGGGCCTATTTTGCAGACTACTGTAACTGAGCGTACTGTCAGAATGCTCAAGGATTCAGAACCAGTCACA TTGTCAATAGAACCTGCACAAGAAACACCGACAGTTTCTGAAAGAAAACGACAGAGTTCAAGCAGCTCGGATGAGAACAAGGAAACTCAAATCAAAGAGG AGGATGTCGGTGAACCTGAGCCAAAACGAAGATTGAAGAAGGGAAACTTAGAGTGTTCAAAGGCTGCTTTAAAACCCGGAAAAAAAACTAAATTTGTCGT GCATGCAGCAGGTGACGTGGGGATCTCAGGTGATGGATATAGATGGCGCAAGTATGGACAGAAGATGGTGAAGGGAAATCCCCATCCCAGGAACTATTAT CGATGCACTTCTGCTGGATGTCCTGTCCGAAAGCACATTGAAACAGCAGTAGATAACACGAACGCTGTCATTATAACATATAAGGGAGTACATGACCATG ACATGCCTGTACCGAAGAAGCGACATGGCCCACCAAGTGCTCCGCCTGCTGCTGCTGCTGCTGCTCCTGCGTCCTTGAGCAGCTTGCCAATTAAGAAAAC CGATACATTGCAAAACCAAGTTGCTTCAACCCAGTGGTCGGTGGGCAAAGAAGGCGAATTAACTGGTGAAACCCTTGATCTCGGGGGTGAGAAGGAGGCG GCGATAGAATCAGCTCGGACGCTTCTGAGCATTGGGTTTGAAATCAAACCTTGCTGA
AA sequence Show only first row Show all	>Potri.006G184800.2 pacid=42770103 polypeptide=Potri.006G184800.2.p locus=Potri.006G184800 ID=Potri.006G184800.2.v4.1 annot-version=v4.1 MAGSESFEALEVQNNEQKRQGNEQNNGNFVEEEELEGDYIEEEEESQLSELQQLVELPSSQVEEEMRDGQVETLTVVPSSSTAILSKENDQHVGLKGNSA LKTHVEAEFKEQVGLSHQEVLGSVTAQSAKAQTQNQLPPSACPTSSSELSLTSVTQPISSAPSPTPPEKRLSPPEVKNACIPEAGHQSSAKLKALHVPVA RTSIPDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGRVIEIVNKGMHSHPPRKNNSTRESRSGLSVGPILQTTVTERTVRMLKDSEPVT LSIEPAQETPTVSERKRQSSSSSDENKETQIKEEDVGEPEPKRRLKKGNLECSKAALKPGKKTKFVVHAAGDVGISGDGYRWRKYGQKMVKGNPHPRNYY RCTSAGCPVRKHIETAVDNTNAVIITYKGVHDHDMPVPKKRHGPPSAPPAAAAAAPASLSSLPIKKTDTLQNQVASTQWSVGKEGELTGETLDLGGEKEA AIESARTLLSIGFEIKPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30935	WRKY	ATWRKY32, WRKY3...	WRKY DNA-binding protein 32 (....		Potri.006G184800 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	6.32	0.7992
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	9.48	0.8205
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.010G046100 [exp]	12.96	0.7952
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Potri.014G071400 [exp]	17.05	0.8175
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.001G276800 [exp]	17.20	0.7609
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	17.72	0.8186
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	20.66	0.8080
AT4G18530			Protein of unknown function (D...		Potri.004G227700 [exp]	21.16	0.7696
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Potri.012G034300 [exp]	21.21	0.8006
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.002G119900 [exp]	21.56	0.8106

Compare expression of checked genes

Potri.006G184800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.