Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24220 404 / 6e-141 ATPUP5 purine permease 5 (.1.2) AT4G18220 133 / 1e-35 Drug/metabolite transporter superfamily protein (.1) AT4G18210 124 / 3e-32 ATPUP10 purine permease 10 (.1) AT1G44750 124 / 4e-32 ATPUP11 purine permease 11 (.1.2.3) AT4G18197 124 / 7e-32 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT1G28220 120 / 7e-31 ATPUP3 purine permease 3 (.1) AT1G28230 117 / 7e-30 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 116 / 2e-29 ATPUP2 purine permease 2 (.1.2) AT5G41160 111 / 1e-27 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT4G18205 110 / 7e-27 AT4G18200 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043900 [exp] 140 / 4e-38 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.005G160300 [exp] 137 / 2e-37 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.001G147600 [exp] 132 / 7e-35 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 122 / 2e-31 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 115 / 5e-29 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.002G099600 [exp] 113 / 3e-28 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.003G156900 [exp] 85 / 7e-18 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 68 / 2e-12 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036272 [exp] 430 / 8e-151 AT2G24220 417 / 4e-146 purine permease 5 (.1.2) Lus10022148 [exp] 211 / 1e-66 AT2G24220 204 / 4e-64 purine permease 5 (.1.2) Lus10020950 [exp] 145 / 5e-40 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015832 [exp] 138 / 1e-37 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10015906 [exp] 135 / 9e-37 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10020416 [exp] 131 / 6e-35 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10010757 [exp] 129 / 6e-34 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10008714 [exp] 127 / 2e-33 AT1G28220 286 / 7e-95 purine permease 3 (.1) Lus10041133 [exp] 126 / 2e-33 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10020939 [exp] 127 / 4e-33 AT1G28220 286 / 9e-95 purine permease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF16913 [poplar] [flax] PUNUT Purine nucleobase transmembrane transport
Representative CDS sequence Show only first row Show all	>Potri.006G184900.2 pacid=42769739 polypeptide=Potri.006G184900.2.p locus=Potri.006G184900 ID=Potri.006G184900.2.v4.1 annot-version=v4.1 ATGATAGAAACACGACTTCTCCAGCCAGAAACAATTATGGAGGAGGGATCATCAAAACCTTCAAATTCATTGTGGGACAAAATTCGCAACTTGAAGCACA TTACTATGGAAGGATACAAAAGAAAGCCAATCTCGCACTGGATTCTTCTGGCTTTGAGCATCGTGGCCATGCTTGTGGCTTTTCCTGCATCAAGCCTTCT CACACGGGTCTATTATTCGAATGGGGGTGCAAGCAAGTGGATTATTTCATGGGTGGCAGTTGCTGGGTGGCCTTTAACTGCTTTAATTTTGTTTCCTTCT TACTTCTTTCTTGATAATTCTCCCACTCCTCTGACCTTCAAACTCCTTGTTTCTTATATTGTGCTGGGTTTCTTAAGTGCTGCGGACAATCTCATGTATG CATATGCCTACGCATACCTCCCAGCATCAACTGCTGCTCTTCTGGCTTCATCATCCCTAGTGTTTTCTGCTCTATGTGGATATTTTATTGTGCACAACAA ACTGAATGCTTCCATGGTAAATGCTATTGTCATAATTACTGCTGCCATGGCAATGATTGCATTAGATTCGGATTCAGACAGGTACGATTATGTTACTGAT CACCAATATACCATGGGTTTTATATGGGATATTTTGGGATCCGCTCTTCATGGCCTCATCTTTGCTCTCTCGGAGCTAGTTTTCGTTAAGTTGATGGGAA GAAGATCCTTCCATGTTGTGTTGGAGCAGCAGGTCATGGTTTCTTTCTTTGGTTTTGTATTTACCACCATTGGGGTTATTTTAAACAACGATTTTGAAGG GATGGCATCCGAGGCTAGATCATTCAAGGGAGGTAAATCTTCATATATCCTGGTTCTTGTATGGGGTACCATTACTTTTCAGCTGGGGGTATTGGGAGGA ACTGCTGTGCTTTATTTGGCTTCCACTGTGATGGCCGGTGTTCTCAATGCAATAAGGGTACCAATCACAGCTATTGCTGCTGTTATTTTGCTACATGATC CCATGAGTGGTTTCAAGATTCTTTCCTTATTAATCACATTTTGGGGATTTACTTCTTACATATATGGAAATTCCTCAGCTAGTAGTGAAGAGTCCCCGTC ATAA
AA sequence Show only first row Show all	>Potri.006G184900.2 pacid=42769739 polypeptide=Potri.006G184900.2.p locus=Potri.006G184900 ID=Potri.006G184900.2.v4.1 annot-version=v4.1 MIETRLLQPETIMEEGSSKPSNSLWDKIRNLKHITMEGYKRKPISHWILLALSIVAMLVAFPASSLLTRVYYSNGGASKWIISWVAVAGWPLTALILFPS YFFLDNSPTPLTFKLLVSYIVLGFLSAADNLMYAYAYAYLPASTAALLASSSLVFSALCGYFIVHNKLNASMVNAIVIITAAMAMIALDSDSDRYDYVTD HQYTMGFIWDILGSALHGLIFALSELVFVKLMGRRSFHVVLEQQVMVSFFGFVFTTIGVILNNDFEGMASEARSFKGGKSSYILVLVWGTITFQLGVLGG TAVLYLASTVMAGVLNAIRVPITAIAAVILLHDPMSGFKILSLLITFWGFTSYIYGNSSASSEESPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Potri.006G184900 [exp]	0	1
AT5G55960			unknown protein		Potri.001G370500 [exp]	1.41	0.8470
AT3G57360			unknown protein		Potri.017G142200 [exp]	6.16	0.8053
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Potri.003G019500 [exp]	7.48	0.8351
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.006G026200 [exp]	8.18	0.7742
AT1G54730			Major facilitator superfamily ...		Potri.005G040000 [exp]	9.11	0.8529
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	12.48	0.8270
AT2G23200			Protein kinase superfamily pro...		Potri.005G143200 [exp]	12.84	0.8365
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	16.52	0.8092	Pt-APK1.2
AT5G47740			Adenine nucleotide alpha hydro...		Potri.012G084700 [exp]	16.94	0.8242
AT5G17600			RING/U-box superfamily protein...		Potri.001G141200 [exp]	19.44	0.7967

Compare expression of checked genes

Potri.006G184900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.