Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EIF.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13950 291 / 7e-103 EIF5A, ATELF5A-1, EIF-5A eukaryotic elongation factor 5A-1 (.1) AT1G69410 286 / 6e-101 ATELF5A-3 eukaryotic elongation factor 5A-3 (.1) AT1G26630 268 / 1e-93 ATELF5A-2, FBR12 FUMONISIN B1-RESISTANT12, EUKARYOTIC ELONGATION FACTOR 5A-2, Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.1), Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107300 [exp] 325 / 4e-116 AT1G13950 290 / 4e-102 eukaryotic elongation factor 5A-1 (.1) Potri.008G092000 [exp] 319 / 8e-114 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Potri.010G162800 [exp] 311 / 7e-111 AT1G13950 286 / 7e-101 eukaryotic elongation factor 5A-1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026637 [exp] 318 / 3e-113 AT1G13950 295 / 4e-104 eukaryotic elongation factor 5A-1 (.1) Lus10030422 [exp] 317 / 8e-113 AT1G13950 295 / 3e-104 eukaryotic elongation factor 5A-1 (.1) Lus10036801 [exp] 306 / 2e-108 AT1G13950 292 / 5e-103 eukaryotic elongation factor 5A-1 (.1) Lus10037129 [exp] 304 / 7e-108 AT1G13950 292 / 4e-103 eukaryotic elongation factor 5A-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF01287 [poplar] [flax] eIF-5a Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Representative CDS sequence Show only first row Show all	>Potri.006G185000.1 pacid=42769405 polypeptide=Potri.006G185000.1.p locus=Potri.006G185000 ID=Potri.006G185000.1.v4.1 annot-version=v4.1 ATGTCGGACGAGGAGCACCACTTTGAATCCAAGGCTGATGCAGGAGCCTCCAAGACTTACCCTCAGCAAGCTGGTACCATCCGTAAGAATGGTTACATAG TCATTAAGAACCGCCCTTGCAAGGTTGTTGAGGTTTCCACCTCAAAGACAGGCAAGCACGGACATGCTAAGTGCCACTTTGTGGGAATTGATATATTTAA TGGGAAAAAGCTTGAAGATATTGTTCCCTCATCTCACAACTGTGATGTTCCCCATGTTAATCGTGTTGATTATCAATTGATTGATATCTCTGAAGATGGT TTTGTGAGTCTTTTGACTGAAAATGGAAATACCAAGGATGATCTGAGGCTTCCCACTGATGACAGTCTACTTACTCAGATTAAAGATGGATTTGGCGAAG GGAAGGACCTTGTGGTGTCTGTCATGTCTGCCATGGGAGAGGAGCAGATCTGTGCCCTTAAGGACATTGGCCCAAAAAATTGA
AA sequence Show only first row Show all	>Potri.006G185000.1 pacid=42769405 polypeptide=Potri.006G185000.1.p locus=Potri.006G185000 ID=Potri.006G185000.1.v4.1 annot-version=v4.1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDG FVSLLTENGNTKDDLRLPTDDSLLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Potri.006G185000 [exp]	0	1	Pt-EIF.4
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	1.00	0.7852
AT3G59600		NRPE8B, NRPD8B,...	RNA polymerase Rpb8 (.1)		Potri.013G120500 [exp]	2.82	0.7756	Pt-ATRPABC16.2
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Potri.008G019400 [exp]	4.69	0.7139	VAMP727.1
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.005G109900 [exp]	5.29	0.7687
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.018G110700 [exp]	6.70	0.7751
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	7.07	0.7184
AT1G02305			Cysteine proteinases superfami...		Potri.002G184300 [exp]	7.93	0.7278
AT4G29160		SNF7.1	SNF7 family protein (.1.2.3)		Potri.018G069900 [exp]	8.00	0.7402
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G139800 [exp]	10.67	0.6826	MP2.3
AT1G51200			A20/AN1-like zinc finger famil...		Potri.016G051700 [exp]	10.67	0.7433

Compare expression of checked genes

Potri.006G185000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.