Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24230 1159 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58150 718 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 356 / 5e-107 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G55610 353 / 7e-106 BRL1 BRI1 like (.1.2) AT3G13380 337 / 6e-100 BRL3 BRI1-like 3 (.1) AT5G45800 314 / 1e-95 MEE62 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) AT2G02220 305 / 1e-89 ATPSKR1 phytosulfokin receptor 1 (.1) AT5G01890 300 / 4e-88 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 301 / 9e-88 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G75820 294 / 1e-85 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107400 [exp] 1480 / 0 AT2G24230 1153 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G058500 [exp] 347 / 3e-108 AT5G45800 709 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.010G101100 [exp] 357 / 2e-107 AT2G01950 1510 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.011G067900 [exp] 341 / 9e-106 AT5G45800 731 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Potri.011G169600 [exp] 352 / 3e-105 AT1G55610 1500 / 0.0 BRI1 like (.1.2) Potri.001G472900 [exp] 352 / 4e-105 AT1G55610 1485 / 0.0 BRI1 like (.1.2) Potri.015G141200 [exp] 350 / 4e-104 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.008G140500 [exp] 347 / 7e-104 AT2G01950 1535 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Potri.005G086500 [exp] 320 / 7e-94 AT4G39400 1398 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036608 [exp] 1224 / 0 AT2G24230 1134 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035826 [exp] 1188 / 0 AT2G24230 1081 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10029235 [exp] 352 / 1e-109 AT5G45800 668 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10007287 [exp] 337 / 2e-104 AT5G45800 657 / 0.0 maternal effect embryo arrest 62, Leucine-rich repeat protein kinase family protein (.1) Lus10005784 [exp] 340 / 6e-101 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10033533 [exp] 340 / 6e-101 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038726 [exp] 335 / 1e-99 AT2G01950 1501 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10020835 [exp] 333 / 2e-98 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039132 [exp] 330 / 1e-97 AT2G01950 1503 / 0.0 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) Lus10006675 [exp] 299 / 4e-88 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G185100.1 pacid=42770217 polypeptide=Potri.006G185100.1.p locus=Potri.006G185100 ID=Potri.006G185100.1.v4.1 annot-version=v4.1 ATGGGATTTAGTTTCCTTCGCTCTATATTGATTCTCTCACTGTTCTTCAAGCCTTTGGCTTGTCAACAACCCAATACTGATGGGTTCTTTATCTCTGAGT TTTTGAAGAACACGGGCCTAACTTCTTCTCCACTATACAACTCTTCTGCCTCCGTTTGTTCATGGCAAGGTGTGTTCTGTGATGCCAAAAAAGAAAACGT TGTTGAGTTTCTGGCTTCTGGTTTAGGCCTTTCTGGCTCTATTCCTGATACCACCATTGGTAAACTAAGCAAGCTTCAGACTTTGGATCTTAGCAACAAC AAAATCACATCTTTGCCTTCGGACTTGTGGAGTTTAGGCACTCTCAAGGTCCTCAATCTATCTTCAAATCAGATTTCTGGGCCCCTGCCCAACAACATTG GCAATTTTGGTGCGCTTGAAATAATTGATCTATCAAGCAACAATTTTTCTGGTGAAATCCCTGCAGCAATAAGCTCCCTTGGTGGTTTGAGGGTTCTTAA ACTTGACAGAAATGGGTTTGAAGGAAGCATTCCATCGGGAATTCTGAGTTGCCAGTCACTGTACTTTATTGATCTTTCAATGAATAAGCTGGATGGGTCC TTACCAGATGGTTTTGGTACCGCTTTCCCGAAGCTCAAAACCTTAAACCTTGCAGGAAATGGGATTCAAGGCCGGGACTCGGATATCTCATCAATGAAAT CCATCACTAGTCTTAACATTTCGGGGAATTCGTTTCAGGGTTCAGTTATGGGTGTGTTTCAGGAGCTGGTGGAGGTGATGGACCTGAGCAAAAACCAGTT TCAAGGTCACATTTCTCAGGTACATTTCAATTCTACCTACAATTGGTCTCGTCTGGTTTATTTGGACTTGTCAGAGAATCAGCTTAGTGGAGAGATTTTT CAAGATTTCAGTCAGGCCCCGAATCTCAAATACCTTAATCTTGCATTCAATAGATTTACTAAAGAGGATTTCCCGCGAATTGATATGCTTTCGGAATTAG AATATCTCAATTTGTCTAAAACTAGTGTCACAGGTCACATTCCAAGTGAAATCGCACAATTGAGTAGTCTGCACACACTTGATCTTTCTCAAAATCATCT CAGTGGCCAAATTCCTCGGTTAACCATCAAAAACCTTCAAGTTCTTGATGTGTCACATAACAATTTGAGTGGAGAGATCCCAGTGTCCCTCTTGCAAAAA CTCCCACGGATGGAGAGCTACAATTTCTCTTACAACAATTTAACCCTTTGTGGCACAGAATTTTCCCGTGAAACCTTCCAAACACACTTCCATGGATCAT TAGACAGCTGCCCAATTGCTGCGAACCCAGGCCTTTTTAAAAGAAAAGTCACCAACCACAAGGGACTAAAGCTTGCTCTGGGTTTAGCCCTTTCCTTGGT CTTCTTGCTTGCAGGACTGCTTTTTCTCGCCTTTGGTTGTAGAAGGAAACCCAAAACGTGGGAAGTGAAGCAAACCTCGTACAAGGAAGAACAAAATATT TCAGGCCCCTTTTCCTTCCAGACTGATTCCACAACATGGGTTGCTGATGTTAAGCAGGCAAATTCAGTCCCAGTGGTGATTTTTGAGAAGCCATTGTTGA ATATCACATTTGCAGACCTCTTGTCTGCTACTTCAAATTTTGATAGAGGAACCCTTTTGGCTGAAGGGAAATTTGGGCCTGTTTATAGGGGATTTCTACC TGGAGGAATTCATGTAGCCGTGAAAGTGTTGGTCCATGGATCCACATTGACAGACCAAGAAGCTGCCAGAGAACTTGAGTACCTTGGTGGAATTAAGCAC CCCAATCTTGTTCCATTGACTGGCTACTGCTTAGCTGGGGATCAAAGAATTGCTATTTATGATTACATGGAGAATGGGAACTTGCAAAATTTGCTCCATG ATTTGCCACTTGGGATTCAGATAACCGAAGATTGGAGCAGAGAGACATGGGAAGAAGATGACAATAATGGAATTCAAAATGTTGGTTCTGAAGGGTTATT AACAACCTGGAGATTCCGACACAAAATTGCACTTGGCACTGCTCGTGCATTGTCATTTCTTCATCATGGTTGCTCACCTCCAATTATTCATAGAGATGTC AAAGCTAGTAGTGTTTATCTAGATTATAACTTGGAACCAAGATTATCTGATTTTGGCCTGGCCAGGGTCTTGGGCAACGGTTTAGATGAGGAGATTGCTC GTGGCTCACCTGGTTATGTTCCCCCAGAGTTTACTGATCCAGACAACGACAGCTCAACTCCAAAATCTGATGTATATTGCTTCGGGGTTGTTTTATTTGA GCTAATTACTAGAAAAAAGCCAATTGGAGATGATTATCCTGGAGAGAAAAATTCAACTTTAGTTAGTTGGGTTAGAGGATTGGTAAGGAAGAGCCAAGGG TCCAGAGCAATTGATCCGAAAATTCGCAATACTGGACCAGAACGCGAAATGGAGGAGGCCCTCAAGATTGGATATCTGTGCACAGCTGACCTCCCCTCAA AGCGACCAAGCATGCAACAGATAGTTGGACTTCTCAAAGACATTGAACCAACAACTCATCAATGA
AA sequence Show only first row Show all	>Potri.006G185100.1 pacid=42770217 polypeptide=Potri.006G185100.1.p locus=Potri.006G185100 ID=Potri.006G185100.1.v4.1 annot-version=v4.1 MGFSFLRSILILSLFFKPLACQQPNTDGFFISEFLKNTGLTSSPLYNSSASVCSWQGVFCDAKKENVVEFLASGLGLSGSIPDTTIGKLSKLQTLDLSNN KITSLPSDLWSLGTLKVLNLSSNQISGPLPNNIGNFGALEIIDLSSNNFSGEIPAAISSLGGLRVLKLDRNGFEGSIPSGILSCQSLYFIDLSMNKLDGS LPDGFGTAFPKLKTLNLAGNGIQGRDSDISSMKSITSLNISGNSFQGSVMGVFQELVEVMDLSKNQFQGHISQVHFNSTYNWSRLVYLDLSENQLSGEIF QDFSQAPNLKYLNLAFNRFTKEDFPRIDMLSELEYLNLSKTSVTGHIPSEIAQLSSLHTLDLSQNHLSGQIPRLTIKNLQVLDVSHNNLSGEIPVSLLQK LPRMESYNFSYNNLTLCGTEFSRETFQTHFHGSLDSCPIAANPGLFKRKVTNHKGLKLALGLALSLVFLLAGLLFLAFGCRRKPKTWEVKQTSYKEEQNI SGPFSFQTDSTTWVADVKQANSVPVVIFEKPLLNITFADLLSATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVHGSTLTDQEAARELEYLGGIKH PNLVPLTGYCLAGDQRIAIYDYMENGNLQNLLHDLPLGIQITEDWSRETWEEDDNNGIQNVGSEGLLTTWRFRHKIALGTARALSFLHHGCSPPIIHRDV KASSVYLDYNLEPRLSDFGLARVLGNGLDEEIARGSPGYVPPEFTDPDNDSSTPKSDVYCFGVVLFELITRKKPIGDDYPGEKNSTLVSWVRGLVRKSQG SRAIDPKIRNTGPEREMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPTTHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24230			Leucine-rich repeat protein ki...		Potri.006G185100 [exp]	0	1
AT1G63430			Leucine-rich repeat protein ki...		Potri.001G106600 [exp]	4.79	0.8391
AT5G65950			unknown protein		Potri.001G457201 [exp]	6.24	0.7715
AT1G77680			Ribonuclease II/R family prote...		Potri.005G174800 [exp]	6.70	0.8038
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	9.16	0.8152
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.003G144900 [exp]	9.48	0.7798
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	11.09	0.8124	PEPC.2
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Potri.014G012300 [exp]	16.24	0.7551
AT5G54920			unknown protein		Potri.001G423200 [exp]	19.07	0.7333
AT1G38131			O-fucosyltransferase family pr...		Potri.005G173500 [exp]	21.79	0.7593
AT1G21090			Cupredoxin superfamily protein...		Potri.002G067600 [exp]	23.32	0.8095

Compare expression of checked genes

Potri.006G185100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.