Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30950 689 / 0 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) AT5G05580 112 / 7e-27 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 109 / 5e-26 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT2G29980 107 / 2e-25 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT3G12120 103 / 5e-24 FAD2 fatty acid desaturase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G107700 [exp] 603 / 0 AT4G30950 555 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Potri.006G101500 [exp] 125 / 1e-31 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 125 / 3e-31 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 122 / 3e-30 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.010G187800 [exp] 118 / 6e-29 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.001G252900 [exp] 111 / 6e-27 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.006G192000 [exp] 97 / 7e-22 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 95 / 5e-21 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 89 / 3e-19 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036613 [exp] 711 / 0 AT4G30950 669 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Lus10035831 [exp] 711 / 0 AT4G30950 672 / 0.0 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1) Lus10005039 [exp] 119 / 1e-29 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10027809 [exp] 117 / 1e-28 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10038321 [exp] 105 / 1e-24 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10036184 [exp] 104 / 2e-24 AT2G29980 551 / 0.0 fatty acid desaturase 3 (.1.2) Lus10018245 [exp] 102 / 9e-24 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10004176 [exp] 102 / 1e-23 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10040660 [exp] 100 / 4e-23 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10021050 [exp] 99 / 2e-22 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G185400.1 pacid=42767263 polypeptide=Potri.006G185400.1.p locus=Potri.006G185400 ID=Potri.006G185400.1.v4.1 annot-version=v4.1 ATGGCTTGCAGAATTGCAGACCCTTCTGTTTTCCTCTTCACGGGTCCTCATCAAAGAATAAGGAGCCAAAAGATTGCAACCCATTCCGCTCCATGTATGA CAGGCAACTGGCATTTAACATGGGACAGGCTTCTTGTGAAGGGAGAGAATCATAAGAAATGGGTGATTCCCATGAGAAGAACTAGAACTGTACAAGCTGT GGCTGCTCCAGTGGCACCATCTTCCGCAGACAGTGCAGAGTATAGAAAACAGCTGGCAGAAAGCTATGGCTTCAGGAAAATTGGAGAACCACTCCCTGAC AACATTACATTAAAGGATGTCATGGATACACTCCCTAAAAAGGTGTTTGAGATTGATGATATGAAAGCATGGAAGTCAGTTTTAGTATCAGTCACTTCAT ATGCATTTGGGCTCTTTATGATTTCAAAGGCCCCATGGTATCTACTTCCCTTTGCTTGGGCATGGACAGGGACTGCTGTTACTGGGTTCTTTGTTATAGG CCATGATTGTGCTCACAAATCATTTTCAAGGAACAAAGTAGTGGAAGACATTGTGGGAACTCTGGCATTTCTGCCGTTAATTTACCCATATGAGCCATGG AGGTTTAAGCACGACAAGCATCATGCGAAAACAAACATGTTAGAGGAAGATACAGCTTGGCATCCTGTGTGGAAAGCAGAGTTTGATTCCTCGCCTAATT TACGCAAGGCAATTATATTCGGATATGGCCCATTTCGGCCTTGGATGTCTATAGGTCACTGGTTGATATGGCACTTCAATTTAAAAAAGTTCAGATCAAA TGAAACCCAGAGGGTGAAGATAAGTTTGGCATGCGTCTTTGGGTTTATGGCAGTCGGTTGGCCTTTGATTATCTATAAAGCAGGGATCATGGGATGGATC AAGTTCTGGTTAATGCCATGGTTAGGCTATCACTTCTGGATGAGTACTTTCACAATGGTGCATCATACGGCTCCTCACATCCCTTTCAAATCTTCAGATG AGTGGAATGCGGCTCAGGCCCAGCTTAATGGAACAGTTCATTGTGATTACCCCAGTTGGATTGAGATCCTCTGTCATGATATCAATGTACACATACCCCA TCATGTTTCATCGAGGATACCACACTATAATCTACGGATGGCTCATAAATCTCTTCAAGAAAACTGGGGAAAGTATTTGAATGAGGCTAAATGGAATTGG CGTTTGATGAAGACAATAATGACATTGTGCCATGTTTATGATAAGGAGGAAAACTATGTTGCTTTTGACCAGCTTGCTCCTGAAGAATCTCAACCAGTCG CATTCCTTAAAAGAGTGATGCCTGATTATGCTTGA
AA sequence Show only first row Show all	>Potri.006G185400.1 pacid=42767263 polypeptide=Potri.006G185400.1.p locus=Potri.006G185400 ID=Potri.006G185400.1.v4.1 annot-version=v4.1 MACRIADPSVFLFTGPHQRIRSQKIATHSAPCMTGNWHLTWDRLLVKGENHKKWVIPMRRTRTVQAVAAPVAPSSADSAEYRKQLAESYGFRKIGEPLPD NITLKDVMDTLPKKVFEIDDMKAWKSVLVSVTSYAFGLFMISKAPWYLLPFAWAWTGTAVTGFFVIGHDCAHKSFSRNKVVEDIVGTLAFLPLIYPYEPW RFKHDKHHAKTNMLEEDTAWHPVWKAEFDSSPNLRKAIIFGYGPFRPWMSIGHWLIWHFNLKKFRSNETQRVKISLACVFGFMAVGWPLIIYKAGIMGWI KFWLMPWLGYHFWMSTFTMVHHTAPHIPFKSSDEWNAAQAQLNGTVHCDYPSWIEILCHDINVHIPHHVSSRIPHYNLRMAHKSLQENWGKYLNEAKWNW RLMKTIMTLCHVYDKEENYVAFDQLAPEESQPVAFLKRVMPDYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Potri.006G185400 [exp]	0	1
AT2G37660			NAD(P)-binding Rossmann-fold s...		Potri.006G086800 [exp]	4.35	0.9292
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Potri.016G040200 [exp]	4.79	0.9530	LYC.2
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.011G057800 [exp]	6.00	0.9454	APE2.1
AT3G27160		GHS1	GLUCOSE HYPERSENSITIVE 1, Ribo...		Potri.001G331600 [exp]	10.48	0.9470	GHS1.1
AT3G04760			Pentatricopeptide repeat (PPR-...		Potri.013G047000 [exp]	13.56	0.9454
AT3G55040		GSTL2	glutathione transferase lambda...		Potri.008G046800 [exp]	15.65	0.9202
AT1G64150			Uncharacterized protein family...		Potri.003G134300 [exp]	16.12	0.9431
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.004G048900 [exp]	19.74	0.9324	Pt-APE2.2
AT2G21960			unknown protein		Potri.005G084400 [exp]	20.83	0.9391
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Potri.019G089700 [exp]	21.42	0.9381

Compare expression of checked genes

Potri.006G185400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.