Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58160 594 / 0 actin binding (.1) AT2G25050 533 / 2e-179 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT5G07740 509 / 1e-165 actin binding (.1) AT1G31810 466 / 3e-152 AFH14 Formin Homology 14 (.1) AT3G32410 65 / 1e-11 unknown protein AT2G25052 46 / 1e-06 unknown protein AT3G50110 49 / 7e-06 PTEN2B, ATPEN3 phosphatase and TENsin homolog deleted on chromosome ten 2B, Arabidopsis thaliana phosphatase and TENsin homolog deleted on chromosome ten 3, PTEN 3 (.1) AT3G19420 47 / 2e-05 PTEN2A, ATPEN2 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108000 [exp] 902 / 0 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G263700 [exp] 601 / 0 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.018G019600 [exp] 574 / 0 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.015G061001 [exp] 530 / 8e-175 AT5G07740 722 / 0.0 actin binding (.1) Potri.012G067900 [exp] 525 / 2e-173 AT5G07740 727 / 0.0 actin binding (.1) Potri.003G103800 [exp] 465 / 4e-151 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.007G047900 [exp] 47 / 2e-05 AT3G19420 702 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.001G302000 [exp] 47 / 4e-05 AT3G19420 848 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1) Potri.009G098000 [exp] 45 / 9e-05 AT3G19420 811 / 0.0 phosphatase and TENsin homolog deleted on chromosome ten 2A, PTEN 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035830 [exp] 653 / 0 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 649 / 0 AT5G58160 608 / 0.0 actin binding (.1) Lus10015724 [exp] 506 / 6e-168 AT5G07740 723 / 0.0 actin binding (.1) Lus10003482 [exp] 507 / 9e-167 AT5G07740 714 / 0.0 actin binding (.1) Lus10003956 [exp] 476 / 1e-155 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10023804 [exp] 466 / 1e-151 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10017556 [exp] 292 / 7e-95 AT5G07740 392 / 1e-124 actin binding (.1) Lus10024450 [exp] 281 / 2e-83 AT5G58160 600 / 0.0 actin binding (.1) Lus10007447 [exp] 265 / 1e-77 AT5G58160 604 / 0.0 actin binding (.1) Lus10015725 [exp] 194 / 2e-59 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10409 [poplar] [flax] PTEN_C2 C2 domain of PTEN tumour-suppressor protein
Representative CDS sequence Show only first row Show all	>Potri.006G185501.1 pacid=42770565 polypeptide=Potri.006G185501.1.p locus=Potri.006G185501 ID=Potri.006G185501.1.v4.1 annot-version=v4.1 ATGTCACTGTTTCGCAAATTGTTTTATAGGAAACCCCCTGATGGCCTTCTTGAGGTCTCCGAGCGTGTTTTTGTGTTTGATTGCTGCTTTAATACTGATG CTTGGCAAGAAGAAGATTATAAAGGTTACATAGGCGGAATTGTCAGTCAACTTAAAGAACATTTCCCTGATGCTTCATTCTTGGTGTTTAATTTCCGCGA GGGAGAGAAACAAACCCAGATTGCAGATGCTTTGTCCAAGAATGATATGACCTTAATGGAGTACCCTTGGCAATACGAGGGTTCCCCATTGCTCACGATG GAGATGATCCACCATTTTCTAAGATCAGGTGAAAGTTGGCTCTCCCTTGGACAGCAGAATATTCTGTTAATGCACTGTGAACGTGGTGGTTGGCCGGTTC TCGCTTTCATGCTGGCTGGACTGTTAATTTACAGGAAACAGTACAGTGGAGAGCAGAAGACCTTGGACATGATTCACAGGCAGGCCCCTCGTGAGCTGTT GCAGCTGCTCTCACCATTTAATCATGTACCTTCTCAACTGAGGTATCTACAGTATGTCACAAGGAGGAATGCGGCCTCAGAATGGCCTCCATTGGATAGA GCTCTGACCTTGGATTGTGTCATCCTAAGATCTCTTCCTAATTTTGATGGAGAGGGGGGTTGCTGTCCCCTATTTCGGGTATATGGGCAGGACCCTTTTC TTGTTTCTGATCAAACTTCCAAACTTCTTTACTCAACTCCAAAGAAAGGAAATATTCTCCGGGCTTATAAGCAGATAGAATGTGAACTCGTTAAAATTGA CATTAATTGCCATATACAAGGTGATGTTGTGCTTGAGTGTATCAGCTTAGATGATGACATGGAACTTGAAGAGATGATGTTTCGAGCCGTGTTTAACACA GCATTTATCAGGTCTAACATCTTGATGCTTAACCGTGATGAAATTGACATGTTATGGGATGCAAAAGATCGATTCCCAAAGAACTTCAGGGCAGAGATTC TTTTCTCTGAAATGGATGCTGCCGCATCCATAGTTGCAGAAAATTTATCTGGCTTTGAGGAGAAGGAAGGCCTTCCTGTGGAAGCATTTGCTAACGTTAA AGAGATATTTAGTTCTGTTGAATGGTCAGACCCCAACTCGGATTTTGCGCTTAATGTGCTCCAACAAATTAGTGCATCGAATATTGCTCAGGAAAACTCA AGTGCAGATTTGCAGCACAGAGTAGAGATTAGCACTCAAAAGCAGGAAACGATTCCTAGAAAGGAACTTGCCGGCCAATCTACAGTCACTAATGCCACAG TATCTACAGCTTCCTCAGAACAAGCTTTGACAGTTTCAGCTGGAATTGAACTCATGGAACCCAAAGGTGGTTCTATCTCACCATCAACACCTGCACAGCC TCCACCATTGGGACTTGCTGTGACTTCTAGTGTCATAAAAGTTCATCCTCATCCACCACCAACTCTTCATCTTTCAGCTTCAGAACCATCAGATCCTTCA ACAGTCAAAGAGACTGAAACCATTTAG
AA sequence Show only first row Show all	>Potri.006G185501.1 pacid=42770565 polypeptide=Potri.006G185501.1.p locus=Potri.006G185501 ID=Potri.006G185501.1.v4.1 annot-version=v4.1 MSLFRKLFYRKPPDGLLEVSERVFVFDCCFNTDAWQEEDYKGYIGGIVSQLKEHFPDASFLVFNFREGEKQTQIADALSKNDMTLMEYPWQYEGSPLLTM EMIHHFLRSGESWLSLGQQNILLMHCERGGWPVLAFMLAGLLIYRKQYSGEQKTLDMIHRQAPRELLQLLSPFNHVPSQLRYLQYVTRRNAASEWPPLDR ALTLDCVILRSLPNFDGEGGCCPLFRVYGQDPFLVSDQTSKLLYSTPKKGNILRAYKQIECELVKIDINCHIQGDVVLECISLDDDMELEEMMFRAVFNT AFIRSNILMLNRDEIDMLWDAKDRFPKNFRAEILFSEMDAAASIVAENLSGFEEKEGLPVEAFANVKEIFSSVEWSDPNSDFALNVLQQISASNIAQENS SADLQHRVEISTQKQETIPRKELAGQSTVTNATVSTASSEQALTVSAGIELMEPKGGSISPSTPAQPPPLGLAVTSSVIKVHPHPPPTLHLSASEPSDPS TVKETETI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58160			actin binding (.1)		Potri.006G185501 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	4.47	0.8131
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Potri.006G132300 [exp]	5.74	0.8127
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	6.32	0.7802
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	7.48	0.7992
AT1G48360			zinc ion binding;nucleic acid ...		Potri.002G233800 [exp]	8.48	0.7644
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.010G064300 [exp]	13.67	0.7945
AT1G21980		ATPIPK1, ATPIP5...	phosphatidylinositol-4-phospha...		Potri.002G088100 [exp]	14.07	0.7699	Pt-PIP5.2
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.007G050000 [exp]	16.30	0.8201
					Potri.007G020732 [exp]	17.74	0.8156
AT3G55550			Concanavalin A-like lectin pro...		Potri.010G200600 [exp]	19.89	0.7476

Compare expression of checked genes

Potri.006G185501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.