Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58160 607 / 0 actin binding (.1) AT2G25050 598 / 0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 538 / 0 Actin-binding FH2/DRF autoregulatory protein (.1) AT1G31810 522 / 6e-172 AFH14 Formin Homology 14 (.1) AT5G07740 521 / 4e-168 actin binding (.1) AT5G07770 423 / 3e-139 Actin-binding FH2 protein (.1.2) AT5G07650 392 / 2e-126 Actin-binding FH2 protein (.1) AT5G07780 373 / 4e-123 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 376 / 9e-120 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 200 / 6e-59 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108000 [exp] 825 / 0 AT5G58160 600 / 0.0 actin binding (.1) Potri.018G019600 [exp] 622 / 0 AT2G25050 636 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G263700 [exp] 608 / 0 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.003G103800 [exp] 551 / 0 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.012G067900 [exp] 549 / 2e-180 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 533 / 5e-174 AT5G07740 722 / 0.0 actin binding (.1) Potri.007G054900 [exp] 141 / 1e-34 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 124 / 3e-29 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.005G026300 [exp] 123 / 6e-29 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035830 [exp] 688 / 0 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 683 / 0 AT5G58160 608 / 0.0 actin binding (.1) Lus10007447 [exp] 592 / 0 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 579 / 0 AT5G58160 600 / 0.0 actin binding (.1) Lus10023804 [exp] 529 / 1e-173 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10015724 [exp] 526 / 1e-173 AT5G07740 723 / 0.0 actin binding (.1) Lus10003956 [exp] 524 / 8e-172 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10003482 [exp] 449 / 8e-143 AT5G07740 714 / 0.0 actin binding (.1) Lus10025195 [exp] 139 / 5e-34 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 135 / 1e-32 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.006G185601.1 pacid=42768142 polypeptide=Potri.006G185601.1.p locus=Potri.006G185601 ID=Potri.006G185601.1.v4.1 annot-version=v4.1 ATGCTACCTTTGAAGGAGATTTGCACCATTAGAGCTGTACCTCCTCCACCTCCTCCAACACCACCTTTGAAGGAGAATAGCACTGTTGAAGTTGGATCTC CTCCACCTCCAACACCTCCTGTGTCGGAGAATAGCATTGTTAGAGCTGGACCTCCTCCACCTCCTCTAATGCCACCTTTGAAGGAGAATAACACTGTTGG AGCTGGACCTCCTCCACCTCCTCCAACGCCACCTTTGAAGGAGAATAAAACCATTGGAGCTGGAACTCTTCCACCTCCACCACCTCTTCCGCCTTTGAAG GAGAATGGCACCATTGGAGCTGGAGCTTTTCCTCCACCTCCACCTCCACCTCCACATTTGAAGGAGAATCATGCTATTGGAGCTGGACCTCATCCACCTC CACCTCCTCCCCCTCCTCTTCATTTAGGACCAACTACCGGGCCAATAGTTTCATCTCGGATGCCACTAGCGCCGCCGCTACCTCCTACTATGTCAACCAA TTCCTCCCGTGTTCCTTCTGCACCTCCTTCTGTTCCTTATGGTAAGGGAACTTTAAATACAAGCACCAATGGAGATAATAAATTGCCCGGGCCTCCATCT CCTGCACCACCCTTAGGTTCCCCCTCCATGCCCAAGGGACGTTTATCTCGTACTATAAGTTCACGGACCAGTCAAACAAAAAAGTTGAAGCCATTGCATT GGTTGAAGTTAACAAGAGCTGTACAAGGAAGCTTATGGGCTGAGGCACAAAAGTCTGGTGAAGCCTCCAAGGCCCCAGAGATCGACATGTCAGAACTCGA GAATCTTTTTTCTGCAGCAGTTTCAAATACAGATCATGGCGGGAAATCAAGTGTGCGGGGCTCACGGGGACCTAAAGTTGAAAAAGTGCAACTGGTTGAC CATAGACGAGCATACAATTGTGAAATCATGCTTTCAAAGGTGAAAGTGCCACCACATGAGTTAATGAGTTTAGTACTTGTCCTCGAGGATTCAGCATTAG ACGTTGATCAGGTTGATAACCTCATAAAGTTCTGTCCAACAAAAGAGGAGATGGAACTTCTTAAGGGATACACTGGAGAAAAGGAAAAGTTAGGAAAATG TGAACAGTTCTTCTTAGAGTTGATGAAGGTGCCAAGAGTAGAATCTAAACTCAGAGTTTTCTCATTCAAGATGCAGTTTCATTCCCAGGTTTCTGACCTA AGAAGAAGCCTGAATGTTGTGAACTCTGCAGCAGAAGAGATAAAGAATTCTGCCAAATTGAAGAGAATCATGCAGACTATTCTTTCCCTAGGAAATGCTT TGAATCAGGGAACTGCAAGGGGTTCAGCTATTGGTTTTAGATTGGATAGCCTTCTTAAACTAACTGATACGCGGGCAAGGAACAACAAGATGACTCTCAT GCATTATCTTTGCAAGGTACTTGCTGACAAGCTACCAGAACTTCTAGATTTTTCAAAAGATCTTGCTAGTTTGGAACCTGCAACAAAGATACAATTGAAA TTTTTGGCAGAGGAAATGCAAGCCATAAGCAAAGGACTGGAAAAAGTTGTACAGGAACTGTCTGCCTCAGAAAGTGATGGTCCTATATCAGACAATTTCT GCAAGGTTTTAAAGGAGTTCCTTCGTTTTGCTGAAGCTGAAGTGAGATCCTTGGCTTCTTTGTACTCTGGAGTGGGTAGAAATGTGGATGCATTGATTCT TTATTTTGGAGAAGATCCAGCACGCTGTCCCTTTGAACAAGTTCTATCAACTCTGTTCAATTTTGTGCGACTGTTCCACAAAGCCAATGAGGAGAACTGC AAGCAGCTAGAAATAGAAATGAAGAAATCAACAGAAAATGACAACTCAAAACTGGGTGCTCATAAGGAGTCCAAAGGCTTCTCACAAACTCGAATCGAGA GTGGCATTGTCAAATGA
AA sequence Show only first row Show all	>Potri.006G185601.1 pacid=42768142 polypeptide=Potri.006G185601.1.p locus=Potri.006G185601 ID=Potri.006G185601.1.v4.1 annot-version=v4.1 MLPLKEICTIRAVPPPPPPTPPLKENSTVEVGSPPPPTPPVSENSIVRAGPPPPPLMPPLKENNTVGAGPPPPPPTPPLKENKTIGAGTLPPPPPLPPLK ENGTIGAGAFPPPPPPPPHLKENHAIGAGPHPPPPPPPPLHLGPTTGPIVSSRMPLAPPLPPTMSTNSSRVPSAPPSVPYGKGTLNTSTNGDNKLPGPPS PAPPLGSPSMPKGRLSRTISSRTSQTKKLKPLHWLKLTRAVQGSLWAEAQKSGEASKAPEIDMSELENLFSAAVSNTDHGGKSSVRGSRGPKVEKVQLVD HRRAYNCEIMLSKVKVPPHELMSLVLVLEDSALDVDQVDNLIKFCPTKEEMELLKGYTGEKEKLGKCEQFFLELMKVPRVESKLRVFSFKMQFHSQVSDL RRSLNVVNSAAEEIKNSAKLKRIMQTILSLGNALNQGTARGSAIGFRLDSLLKLTDTRARNNKMTLMHYLCKVLADKLPELLDFSKDLASLEPATKIQLK FLAEEMQAISKGLEKVVQELSASESDGPISDNFCKVLKEFLRFAEAEVRSLASLYSGVGRNVDALILYFGEDPARCPFEQVLSTLFNFVRLFHKANEENC KQLEIEMKKSTENDNSKLGAHKESKGFSQTRIESGIVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	0	1
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	2.44	0.9243
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	2.82	0.9180	BGAL9.1
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Potri.008G201600 [exp]	3.16	0.9227
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Potri.004G057100 [exp]	3.16	0.9171
AT2G28320			Pleckstrin homology (PH) and l...		Potri.009G011200 [exp]	3.46	0.9152
					Potri.004G011300 [exp]	7.61	0.8778
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	9.53	0.9140
AT3G23090			TPX2 (targeting protein for Xk...		Potri.010G076200 [exp]	10.53	0.9213
AT1G07120			unknown protein		Potri.001G279000 [exp]	13.26	0.9063
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	13.85	0.9033	CESA.2

Compare expression of checked genes

Potri.006G185601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.