Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58000 343 / 2e-110 Reticulon family protein (.1) AT2G20590 152 / 1e-39 Reticulon family protein (.1.2) AT4G28430 148 / 4e-38 Reticulon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108200 [exp] 994 / 0 AT5G58000 344 / 1e-110 Reticulon family protein (.1) Potri.007G137700 [exp] 156 / 5e-41 AT2G20590 330 / 2e-109 Reticulon family protein (.1.2) Potri.017G014300 [exp] 148 / 2e-38 AT4G28430 283 / 5e-91 Reticulon family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035829 [exp] 404 / 9e-133 AT5G58000 326 / 1e-105 Reticulon family protein (.1) Lus10036611 [exp] 401 / 2e-131 AT5G58000 325 / 4e-105 Reticulon family protein (.1) Lus10002173 [exp] 120 / 1e-29 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2) Lus10039890 [exp] 117 / 3e-28 AT2G20590 270 / 1e-87 Reticulon family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF02453 [poplar] [flax] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Potri.006G185700.2 pacid=42768010 polypeptide=Potri.006G185700.2.p locus=Potri.006G185700 ID=Potri.006G185700.2.v4.1 annot-version=v4.1 ATGGATGTGAGTAGGAGAAGAGCTGGGGTTAAAACAAGTGTTGTAGCAGGTTCTGTGTGGGAGAGCAGAATGAAACTTGATGAAGTTAAAGGTGGAATTA AGGTATTTAACGGAGAAGAGAATGTTGAAGAGAGTAGAAGTAGTAATGGAGATACTGCAAAAAAGATTGTAAAGAGAGGAGGAGGACAAACTGGTATAAG TACTGGTGTGGCTGTGAGTGGCAAGAGAAAGACTTGGAAATCTGAGATCTTTGAAGGTCCAATTCAGATTGCAAGGGGAAAAACTAGTGAAGTGCAGTGT AAAGAGTTGAGTGTTTCGGTCGATGGAATCAGGAAAAGTCCAGCTCAGGCAAGAAAGGGGAGATCTGAAGGGAGTAATAAAGAGCTTAGGTTGTCTGTTG ATGGTATTGATAAAAGCTTTATTCAGGTCGAGAAAGTAAGTAAAGAGCTTGATGGAAGTCCAATTCAGGTCAAGAAAGGAAGTTCTGAAGCAAATAGAGA GGTTGGTGTTTCTGTTGATGAAAATGAGAATAGCCCAAGTCAGACAAGGAAACAAAGATCTGACTTAAGAGAGGTTTTTGAGTATGATGTAGAATTAAGG AAAGTAAAATCTGATTCTGTTAAGGTTTCAAAGCAATCTGGTATCGGTAAAGATCCTGTACCTGATGGTGGGGATGAAAGTAATTCAGTTCAGTTAAGGA AGGCAAAGTCAGAACCTGACAAGGTACTGAATGAATCGGTTAATCGAATTGAGAAGAGCCCACCTGAAATCGAGGAGACTGGATCTGAGGAAACTTGTGA AGAGTTTGGTATGTGCCAAGAAAAGGTAATTTCTAGTAGCGAAACCAATGAGTTAATAAAGAAACCAGCTCCTGATCTTTTGGTATATAATCCTCCTCCT GGTGATGATGAATTTGAGGGAGACGAAGAAGAGGAAGAAATTGAGATCGAGATTGAAAAGAAAACCTTAGATATTAAGGAGATTAAGATACCAGAAGAGA GGCCTAAGAAGGTTGAAACAAATGTAGCAGAACAAAAGCCTAAGAAGATGGAGATTTGTATAGCAGAACAGAAGCCTAGGAGAGTGGAAGTCGGCACGCC TCAACATAAACCTAAGAAAGTGGAGGTCAGCACTCCTGGGCAGAAACCTAAGAAAGTGGAGTTTAGCACACCTGAAGAGAAACCTAAGAAGGTAGTGAGT GAAGTGAAAAAAGTTGAGCGATTTAACAACAGAACAGCACCAACTTCTTCAGATGTGAATAAACAACCTCCTCCTGTGTTAAGAAGAGCAACACTTTATC AAAATCTTGCAAAGGCTGCTGCTTCTCCTTCAATTCCAGTTGCTAATGAATACCAGAGTTTCAAAGAAACTCGTAGGCATAGCAAGCTTCAAAACCTGGT GGATTTAGTAATGTGGAGAGACCTATCGAGATCTGCATTAGCCTTTGGATTGGGCACATTTATCATAATCTCATCCTCCTACTCTAAAGATCTCAATGTC AGTTTCATTTCTGTGATTTCCTACCTGGGTCTTGTTTATCTTGCTACCATTTTTCTGTATAGATCACTTATTTGCAGGGGAGTTATAGATATAGATGATG ATAGAAGCTATGTGGTGGGTGAAGGTGAGGCAATTTGGTTATTAAAATTGGTTCTGCCTTACTTAAACGAGTGCTTGTTGAAAATTAGAGCCCTTTTTTC TGGTGATCCTTCCACTACAATGAAGATGGCAGTGCTACTCTTTGTTCTTGCCAGGTGTGGCAGCTCCATAACCATCTGGAAGATGGCAAAATTGGGCTTT TTCGGCGTTTTCATTGTACCAAAAGTCTGCTCTTCCTACTCCACACAGTTAACTGCATATGGTAAATTTTGGATTCGACGATTTCGCGATGCTTGGGAGT CATGCTCGCACAAAAAGGCCGTGGCTTTAGGTATCTTCTCCCTCGTCTGGAACCTGTCTTCAATGGTTGCTCGCATTTGGGCTGTGTTTATGATGTTTGT GGCCGTCCGATATTATCAACAGACTATGGAGAGAGATGATTGGGTGGAGGAGGAGGATGCAGAAGCTGATGAGACGTGGCATGGAGATAGTGGAGGACAG AGACAAGGGAGTGGTCCCGCTTCGATAGACGTAAATGAAGTGAGAAAGGGATCCTAA
AA sequence Show only first row Show all	>Potri.006G185700.2 pacid=42768010 polypeptide=Potri.006G185700.2.p locus=Potri.006G185700 ID=Potri.006G185700.2.v4.1 annot-version=v4.1 MDVSRRRAGVKTSVVAGSVWESRMKLDEVKGGIKVFNGEENVEESRSSNGDTAKKIVKRGGGQTGISTGVAVSGKRKTWKSEIFEGPIQIARGKTSEVQC KELSVSVDGIRKSPAQARKGRSEGSNKELRLSVDGIDKSFIQVEKVSKELDGSPIQVKKGSSEANREVGVSVDENENSPSQTRKQRSDLREVFEYDVELR KVKSDSVKVSKQSGIGKDPVPDGGDESNSVQLRKAKSEPDKVLNESVNRIEKSPPEIEETGSEETCEEFGMCQEKVISSSETNELIKKPAPDLLVYNPPP GDDEFEGDEEEEEIEIEIEKKTLDIKEIKIPEERPKKVETNVAEQKPKKMEICIAEQKPRRVEVGTPQHKPKKVEVSTPGQKPKKVEFSTPEEKPKKVVS EVKKVERFNNRTAPTSSDVNKQPPPVLRRATLYQNLAKAAASPSIPVANEYQSFKETRRHSKLQNLVDLVMWRDLSRSALAFGLGTFIIISSSYSKDLNV SFISVISYLGLVYLATIFLYRSLICRGVIDIDDDRSYVVGEGEAIWLLKLVLPYLNECLLKIRALFSGDPSTTMKMAVLLFVLARCGSSITIWKMAKLGF FGVFIVPKVCSSYSTQLTAYGKFWIRRFRDAWESCSHKKAVALGIFSLVWNLSSMVARIWAVFMMFVAVRYYQQTMERDDWVEEEDAEADETWHGDSGGQ RQGSGPASIDVNEVRKGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58000			Reticulon family protein (.1)		Potri.006G185700 [exp]	0	1
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	3.16	0.7978
AT1G20760			Calcium-binding EF hand family...		Potri.002G008600 [exp]	6.92	0.7372
AT4G00340		RLK4	receptor-like protein kinase 4...		Potri.014G086900 [exp]	8.71	0.6500
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Potri.003G155300 [exp]	10.72	0.7074
AT1G36160		GSD1, PAS3, GK,...	PASTICCINO 3, GLOSSYHEAD 1, GU...		Potri.005G169100 [exp]	11.40	0.6266
AT2G22600			RNA-binding KH domain-containi...		Potri.007G011900 [exp]	13.63	0.6601
AT1G27850			unknown protein		Potri.008G178600 [exp]	22.04	0.7305
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.005G255400 [exp]	24.24	0.6858
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.010G159600 [exp]	24.69	0.6306
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	26.49	0.7070

Compare expression of checked genes

Potri.006G185700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.