Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CIPK6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30960 649 / 0 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G45820 530 / 0 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT4G18700 491 / 6e-172 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 486 / 6e-170 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G58380 485 / 1e-169 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT1G29230 471 / 1e-163 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT5G10930 468 / 1e-163 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT1G30270 468 / 3e-163 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 467 / 1e-162 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT5G01810 454 / 2e-158 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G108500 [exp] 776 / 0 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.011G067500 [exp] 522 / 0 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.016G133500 [exp] 519 / 0 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.019G127500 [exp] 503 / 4e-177 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 501 / 9e-177 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 493 / 2e-173 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.019G048800 [exp] 489 / 3e-172 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067600 [exp] 483 / 8e-168 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.006G062800 [exp] 478 / 3e-167 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021852 [exp] 713 / 0 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10036280 [exp] 711 / 0 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022749 [exp] 506 / 2e-178 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10042229 [exp] 493 / 5e-173 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 490 / 5e-172 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10014163 [exp] 488 / 4e-171 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10024448 [exp] 483 / 4e-169 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 478 / 5e-167 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10028115 [exp] 476 / 2e-166 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 473 / 3e-165 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.006G186200.4 pacid=42767394 polypeptide=Potri.006G186200.4.p locus=Potri.006G186200 ID=Potri.006G186200.4.v4.1 annot-version=v4.1 ATGGCAGAAAAAACAAGTGATGGCCACCCGACCTTGCTTCATGGGAAATATGAACTGGGTCGGTTACTAGGCCATGGCACCTTCGCTAAAGTCTACCACG CGCGTAATTTGCAAAGTGGCAAGAGTGTAGCCATGAAGGTAGTTGGCAAAGAAAAGGTGATAAAGGTAGGAATGATGGAGCAAGTCAAACGAGAAATATC AGTTATGAAGATGGTGAGGCACCCCCATATCGTTGAATTAAATGAAGTCATGGCTAGCAAGTCCAAGATCTATTTCGCCATGGAACTTGTTCGAGGCGGC GAGTTGTTCTCCAAGATTGCTAAAGGTAAGCTAAGAGAAGATGTGGCTAGAGTTTATTTTCAGCAGTTGATATCTGCTATTGATTTTTGTCATAGTCGCG GCGTTTATCATCGTGATTTGAAGCCAGAGAATTTGCTGCTTGATGAAGATGGGAAGTTGAAGGTTACAGATTTTGGGCTGAGTGCTTTCTCTGAGCATTT GAAGCAGGATGGGTTATTGCATACAACTTGCGGAACACCAGCTTATGTTGCACCTGAAGTAATTGGGAAGAAAGGGTATGATGGTGCTAAAGCAGATCTT TGGTCTTGTGGTGTTATTCTCTATGTGCTCCTTGCTGGGTTCTTGCCATTTCAAGATGATAATATTGTGGCTATGTATCGAAAGATTTACAGAGGTGACT TCAAATGCCCCCAATGGTTCTCCTCTGAAGCTCGACGACTGATCACAAAGCTTCTTGATCCTAATCCAAGCACTAGAATCACGACATCCAAGGTCATGGA TTCAACTTGGTTCAAGAAATCATTGCCAAAGACGGTGAGAAGCAAAGAAGAGATGGAGTTTGAGGCTTTCAATGGAGAAGAAGATGCTAACGGAGACAAA GCAAAGCAACCTGAAACACTAAACGCGTTTCACATAATATCTTTATCACAGGGATTCGATTTATCACCGCTTTTTGAGGAGAAGACAAGGGAGGGGAAAG AGGAGCTGAGATTTGCCACAACAAGGCCAGCAAGCAGTGTGATTTCAAGACTCGAAGAGGTGGCCAAAGCAGGGAATTTCAATGTCAAGAAGAGTGATTC CAAAGTGAGATTGCAAGGGCAGGAGAGGGGCAGGAAAGGAAAGCTAGCTATTGCAGCTGACATTTTTGCTGTCACGCCATCGTTTTTGGTGGTCGAGGTG AAGAAAGATAATGGAGACACTTTGGAGTATAACCAATTCTGCAGTAATGAGCTGAGACCAGCCCTCAAGGATATTGTTTGGACATCTCCTGCAGAGAATT CAACTCTCGCTTGA
AA sequence Show only first row Show all	>Potri.006G186200.4 pacid=42767394 polypeptide=Potri.006G186200.4.p locus=Potri.006G186200 ID=Potri.006G186200.4.v4.1 annot-version=v4.1 MAEKTSDGHPTLLHGKYELGRLLGHGTFAKVYHARNLQSGKSVAMKVVGKEKVIKVGMMEQVKREISVMKMVRHPHIVELNEVMASKSKIYFAMELVRGG ELFSKIAKGKLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDEDGKLKVTDFGLSAFSEHLKQDGLLHTTCGTPAYVAPEVIGKKGYDGAKADL WSCGVILYVLLAGFLPFQDDNIVAMYRKIYRGDFKCPQWFSSEARRLITKLLDPNPSTRITTSKVMDSTWFKKSLPKTVRSKEEMEFEAFNGEEDANGDK AKQPETLNAFHIISLSQGFDLSPLFEEKTREGKEELRFATTRPASSVISRLEEVAKAGNFNVKKSDSKVRLQGQERGRKGKLAIAADIFAVTPSFLVVEV KKDNGDTLEYNQFCSNELRPALKDIVWTSPAENSTLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G186200 [exp]	0	1	CIPK6.2
AT2G28370			Uncharacterised protein family...		Potri.004G211400 [exp]	8.00	0.8498
AT5G25050			Major facilitator superfamily ...		Potri.018G017100 [exp]	9.79	0.8385
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.001G214201 [exp]	13.63	0.8530
AT2G43330		ATINT1	inositol transporter 1 (.1)		Potri.017G032400 [exp]	14.14	0.8373
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.012G068600 [exp]	15.29	0.8579
AT4G26340			F-box/RNI-like/FBD-like domain...		Potri.011G024200 [exp]	18.73	0.8144
AT3G50810			Uncharacterised protein family...		Potri.004G149332 [exp]	22.00	0.8363
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	40.81	0.8384
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	46.76	0.8367
AT3G21610			Acid phosphatase/vanadium-depe...		Potri.014G156000 [exp]	48.43	0.8185

Compare expression of checked genes

Potri.006G186200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.