Plant FIBer expression Database

Potri.006G186900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58020 259 / 4e-84 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G109800
[exp]
469 / 3e-166 AT5G58020 314 / 2e-105 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035833
[exp]
308 / 6e-103 AT5G58020 372 / 3e-128 unknown protein
Lus10036615
[exp]
307 / 3e-102 AT5G58020 373 / 2e-128 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF04641 Rtf2 Rtf2 RING-finger
Representative CDS sequence
>Potri.006G186900.1 pacid=42767066 polypeptide=Potri.006G186900.1.p locus=Potri.006G186900 ID=Potri.006G186900.1.v4.1 annot-version=v4.1
ATGCACACAAAAAGCCATCAAATTTTCATCCAATCCCAAAATCCCCAATTCAAAACCCAAACCCTAACTCTGGACCCAACTCAAACCCTAACCCTCCACA
ATCTCAAGCTCTCTCTTTTACCCAACAACCAAAACCCCTCTTCTTTCTACTTCACCCTTAATGGAAAACCTTTGAAAGACTCCTCCGTTTTACCAAATCC
CCAAATCACCCCCCTCTCCACGCTAATTTTACAAACCCGGCTCTCTGGCGGCGGTGGCGATGGCGGTGCCACGGGGGCAGAGTCCAGGGACTGCTATCTC
AACATGTATGCTGAAAAAAAGCCTGATAAAGTAGATCCACATGAGCAACGCCTATCGAAATGGCTTAATTGCTCACTTTCAAATGAGCCCTTGATGCAAC
CTTGCGTAATTGATCGCCTCGGTAATATGTTTAATAAGGAAGCTTTAGTTGAGGCTTTGATTGGTAAAAAATTGCCTAAAGAGTTTGGTTATATAAAAGG
TTTGAAAGATATGATTAACATACAGTTAGAGGTGGTTCCAGGTGAGGGGTTGGGTAATGCCCGATTTCAATGTCCAGTAACGGGGTTAGAGTTTAATGGG
AAGTATAAGTTTTTTTCTTTAAAGAAGTGTGGACATGTTTTGAGTGCTAAGGCATTGAAGGAGGTGAAGTCGTCAGCATGTTTGGTTTGTTATAAGGAGT
TTGAGGAGTGTGATAAGATTGTGATAAATGGGAGTGAGGAAGAGGTGGAGGTTTTAAGGGAGAGAATGGAAGGGGATAGATTGAAGGTGAAGGTGAAGGA
GAAGAAAAGGAAGGTGAAGAATGGGGAAGTGGAGGATAATGGGGAGGAGTTTGCAGGTCATGGCGTGGTGACTTCGCGGTTGAGTGGTCAAAAGCATGGG
ATTGTTGATGTTAAGGGAGTGGATAAGGTGGCTGGGAAAGTGAAAGGAAATGGGAAGGTTGAGAATGTGAAAGGGGTTAGTAATGGTGGTTCGAAGCGGT
TTATGGCGGCAGATATGGTACCAGCTAATGCCACTAAGGAGGTATATGCATCCATATTTACTTCATCACAGAAGAAAAAATTCAAGGAGACATATAGTTG
CAGATCCCTTCCGCTTGGTAGGAACTAG
AA sequence
>Potri.006G186900.1 pacid=42767066 polypeptide=Potri.006G186900.1.p locus=Potri.006G186900 ID=Potri.006G186900.1.v4.1 annot-version=v4.1
MHTKSHQIFIQSQNPQFKTQTLTLDPTQTLTLHNLKLSLLPNNQNPSSFYFTLNGKPLKDSSVLPNPQITPLSTLILQTRLSGGGGDGGATGAESRDCYL
NMYAEKKPDKVDPHEQRLSKWLNCSLSNEPLMQPCVIDRLGNMFNKEALVEALIGKKLPKEFGYIKGLKDMINIQLEVVPGEGLGNARFQCPVTGLEFNG
KYKFFSLKKCGHVLSAKALKEVKSSACLVCYKEFEECDKIVINGSEEEVEVLRERMEGDRLKVKVKEKKRKVKNGEVEDNGEEFAGHGVVTSRLSGQKHG
IVDVKGVDKVAGKVKGNGKVENVKGVSNGGSKRFMAADMVPANATKEVYASIFTSSQKKKFKETYSCRSLPLGRN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58020 unknown protein Potri.006G186900
[exp]
0 1
AT5G58020 unknown protein Potri.018G109800
[exp]
1.41 0.8639
AT5G08139 RING/U-box superfamily protein... Potri.012G065300
[exp]
2.64 0.8079
AT1G28060 Pre-mRNA-splicing factor 3 (.1... Potri.010G213300
[exp]
4.47 0.8263
AT5G62030 diphthamide synthesis DPH2 fam... Potri.019G041300
[exp]
6.92 0.8463
AT1G04230 Protein of unknown function (D... Potri.010G078500
[exp]
8.00 0.7833
AT1G13190 RNA-binding (RRM/RBD/RNP motif... Potri.008G182500
[exp]
9.48 0.7980
AT1G30460 C3HZnF CPSF30, ATCPSF3... ARABIDOPSIS THALIANA CLEAVAGE ... Potri.001G357800
[exp]
11.09 0.8355
AT2G41060 RNA-binding (RRM/RBD/RNP motif... Potri.005G081600
[exp]
13.07 0.8039
AT3G13670 Protein kinase family protein ... Potri.001G009700
[exp]
13.41 0.7788
AT4G03550 ATGSL5, PMR4, G... POWDERY MILDEW RESISTANT 4, gl... Potri.013G131300
[exp]
13.74 0.7259

Potri.006G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.