Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52780 424 / 6e-131 Protein of unknown function (DUF2921) (.1) AT4G21700 98 / 2e-20 Protein of unknown function (DUF2921) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G175600 [exp] 523 / 3e-168 AT1G52780 1107 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.003G087400 [exp] 124 / 2e-28 AT4G21700 607 / 0.0 Protein of unknown function (DUF2921) (.1) Potri.011G052500 [exp] 104 / 2e-22 AT4G21700 638 / 0.0 Protein of unknown function (DUF2921) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005493 [exp] 108 / 1e-23 AT4G21700 625 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10006025 [exp] 103 / 5e-22 AT4G21700 627 / 0.0 Protein of unknown function (DUF2921) (.1) Lus10033064 [exp] 67 / 2e-11 AT1G52780 84 / 1e-17 Protein of unknown function (DUF2921) (.1) Lus10030937 [exp] 59 / 2e-08 AT4G21700 504 / 3e-163 Protein of unknown function (DUF2921) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11145 [poplar] [flax] DUF2921 Protein of unknown function (DUF2921)
Representative CDS sequence Show only first row Show all	>Potri.006G187000.1 pacid=42767349 polypeptide=Potri.006G187000.1.p locus=Potri.006G187000 ID=Potri.006G187000.1.v4.1 annot-version=v4.1 ATGCTTTCTTTAAGGCTGTTTTTCTGGAAGAAGATAAAAATATTTGCAAGCCATTTTGTAAAGTCAACCATTGCTACTGGCTACAACCGGTTGCTTTATC TTTTGACTTCCTCAACCATTTCCAAATTCTGCAGTTTAAGATCAAGTGAAGCTGAGATGAAGATCCAGAATTTGCTTTTGTTTCTTTTGGCCCTGTTAGA GTTTTTCATGATCGCTAGCTTCGCACTTCCTGATGATGACGTGTACCGTATATTGAGTGATCCTGCGGTTACTTTCACTTACAGCAGATTATCTGAAGTT GAAAAGCAGTGCCGCTCTCTCCTGTCGTCAGCTTCTGAACTGAAAACTGATGAAGATACAAAGTTTAGACTTATGGGAGGGCTCGCTTTCAGCAACGGAG ATTGGGAGCAGAAAACTGGTGGGGTACCATTGATGCCATTTTTTGACAGTGGCTTGCCAACCAGCTCTACTTCTCTCCCCACTGCCTTGAATTTGGTGTC TTTTGAAGTCAAAGACGTTAGCCAGGTCCAGCATTTTCAAAACACGGTTAGTGTTGGAGGATATTTGGTAATCGGCATATCCAGAGAGAGCTCGTTTGTT CTTGGTTATAACCCAGCGCCAAATTTCATTAGACCTGGTACATCTGCCCTTACATTTGCCTTTGAGGGGCTTTATACCGAGAATGAACAGAATGGAGGGG AACGCAACTTGTGTTTGCTGGGAAAGTCAACAGTCACTAGCGGCATCGGGATTAATGTTCCTTCAGATTTCGCGAATCGCTTTGGTCTAGAAACTGATCA AATCTCACTTGTCCTTCGCTATCCTATGACCTTCAATCTGCGAAATAGAGAAATCCATGGAGAAATGCGTAGCTTAAATGAAAAGGCGAGTCCTAAGTAC TTTGATACAGTATACATAACCTCTCAGTTGGGCCATCAATCGATGTATCAATTTAGCTCAACGGTGCAGGCGTCGCCAACTTGTGAGCCATATCCATATT TTCATGATGAGGTGATGGAAGATGGAGTCCAAAAGTTTAGTTGGTCAAAGTTCTGTACTATTCTCGGTCAGGTTTCGTGGGAAGCTCTCAGTGTTTTTCC AGATTATAAACTTGGTGGAAGTTATGTAGAGGACAGAAAATTGACATCCGTCTTATTTGGGAACGACATTGGTGACATGAATTTGAGTTACAAACATATT AAGCTCATATTGCAACATGTCCAATGCAGTCAAGCAACTTCAAATGACAGTCATGGTGCAGAAGTTTCAGCGGTGCTGAGAGTAATTCCTGCAGAAATGT ATCCAAATTTAGCACGAACATTGACCGGTCTTTCAGGCTTGGTTTTCAATGCTGAGGGGAGGTGGAATCCTTCAAGCGGGAAACTTTGCATGCTTGCTTG TCGTACTGGAGATGATTCAGAACTCAAAAGATGCACTTTACGGATATCACTCTATTTTCCTCGAGCATTGTCGATCAAGCAGAGGAGTTTAGTGTTCGGA AGCATATCTAACATAAGAGATGGAGTAAGCTCAAACTATCATCTTCTTTTTGATTTAGTGATGCAACCTTCATATTTGAGGAACCCAGTCTATTCGTATT TGTCATACAATTACTCAAAGCTTAGTCCGGCTAGCTCCTTTAAAAAGCGAGCTCAGCGTTTCACTACCCTCAGCCATTCTCTGTCGAGGTATCCCGCTCT AAAAGGAGCAGAATCACGAGCTCAGCTTGATTCGCTCTCCGATGAGCTCCTCGTTGATGGCTGTATTGCCCCTGATCTACCTGATGGTCTTGGTACACGT ATCTCCATTCGTATGGAGGTACTTTCGCTAGGTCCACTAATTGGACACTTCCACGAAGATGGTTCAAAGGAGGTTGCAGTCAATACAACAGCTAATGTCA CCTTCACCAACAGACAGCTTCTGAATGTCTCAACACATCTTGTTTTCAGAGAATTGAAAGAAGAAACTCGGGAATTTACCATGATATCTTACAGGAATAT CTCACAGGTGTTCTTGGAAGGTATATATGATCCAGTTATTGGTGAGATGCATCTTATTGGCTGCAGAAAGGTTGCAATCGGAGGCACTGGTGTAGAAAGG GGCCTAGATTGTTTGATTGAAGTTGAAATTCAGTATCCCTCTGAAAACATGGAACATACCAAAATCACCATCACCAGCCAAAGGGGTCGAGATGATCCCC TATGTTTTGGCCCTGTTAGCTTGCTGACTAACAAAACTCCTTGTCAAGACCACTCACTCTATCGAATGGGTCAAGATGACCCCTTATATTTTGGCCCTGT AAGCTTGCCTCGTTATGAAAACCATACATTGACTGTGGCCTATCGAAGAAATTTTGAAGGGATTCTTCGAATTCTGTTGCTTAGTGGGGTAATTGCAATG ACATGGATCCAACTCCATTATATGAAGAAACAAACAAATGTTATTCCTTATGTGTCTCTTGTCATGCTTGCTCTTCAGGTTCTTGGTTATAGCCTTCCAT TGCTCAGTGGTGCTGAAATTCTCTTCATATCTTCGTCTTATGATCTTGATTGGTATGGGCTGTTGCCAAAAGTCCTCGACTATGCTGGAAGATTTCTTGT TTTGGTTTCTTTGCTACTCACTTCAAGGATTTTCCTGATGGTGTACAAATATCAGAACAAACCACTTTGTACTTCCAAGATGAAACATTTTTGGGTTCCT CACAATAAACTGGTCCTTCTAAGTACTTCGGCTGTACACACAGGTGTTCTTATATGGCTATCTGTATATGGGCATCGAGACATGCTGTTTCATCCTGAAA ATGGTAGCTATAAAACAGGAGCTATTCATGTGCAACAAATTTGGATGAGAATCCTAAAAGATTTTGCAGGAGTTGTTCAAGATTTCTTTCTACTTCCTCA GATCATCAGCAACTTCTTGTTGCAGACAAATGTTAAATCACTGCACAAAGCACACTACATTGGGCTTACCTTGATTAGGCTTGTTCTGCATCTTTACGAC TATATCAGCAATCCTTTTCTAGACTCCGAATTCCAAGATTCAGAATTTGCGAGCCCGGAGAGTACTTCTGAGTTTAGAAAGTCTGCGGTTGTAATAATAA TGGTTGTGCTAGCAGTAATAGTCCACATCCAGCAGAATTGGAAGAAGCTAAGCCAGTGGTTGGAATTAAGAAAGTTGTCCGATAAGTTAGACGAAGAAGT CTGA
AA sequence Show only first row Show all	>Potri.006G187000.1 pacid=42767349 polypeptide=Potri.006G187000.1.p locus=Potri.006G187000 ID=Potri.006G187000.1.v4.1 annot-version=v4.1 MLSLRLFFWKKIKIFASHFVKSTIATGYNRLLYLLTSSTISKFCSLRSSEAEMKIQNLLLFLLALLEFFMIASFALPDDDVYRILSDPAVTFTYSRLSEV EKQCRSLLSSASELKTDEDTKFRLMGGLAFSNGDWEQKTGGVPLMPFFDSGLPTSSTSLPTALNLVSFEVKDVSQVQHFQNTVSVGGYLVIGISRESSFV LGYNPAPNFIRPGTSALTFAFEGLYTENEQNGGERNLCLLGKSTVTSGIGINVPSDFANRFGLETDQISLVLRYPMTFNLRNREIHGEMRSLNEKASPKY FDTVYITSQLGHQSMYQFSSTVQASPTCEPYPYFHDEVMEDGVQKFSWSKFCTILGQVSWEALSVFPDYKLGGSYVEDRKLTSVLFGNDIGDMNLSYKHI KLILQHVQCSQATSNDSHGAEVSAVLRVIPAEMYPNLARTLTGLSGLVFNAEGRWNPSSGKLCMLACRTGDDSELKRCTLRISLYFPRALSIKQRSLVFG SISNIRDGVSSNYHLLFDLVMQPSYLRNPVYSYLSYNYSKLSPASSFKKRAQRFTTLSHSLSRYPALKGAESRAQLDSLSDELLVDGCIAPDLPDGLGTR ISIRMEVLSLGPLIGHFHEDGSKEVAVNTTANVTFTNRQLLNVSTHLVFRELKEETREFTMISYRNISQVFLEGIYDPVIGEMHLIGCRKVAIGGTGVER GLDCLIEVEIQYPSENMEHTKITITSQRGRDDPLCFGPVSLLTNKTPCQDHSLYRMGQDDPLYFGPVSLPRYENHTLTVAYRRNFEGILRILLLSGVIAM TWIQLHYMKKQTNVIPYVSLVMLALQVLGYSLPLLSGAEILFISSSYDLDWYGLLPKVLDYAGRFLVLVSLLLTSRIFLMVYKYQNKPLCTSKMKHFWVP HNKLVLLSTSAVHTGVLIWLSVYGHRDMLFHPENGSYKTGAIHVQQIWMRILKDFAGVVQDFFLLPQIISNFLLQTNVKSLHKAHYIGLTLIRLVLHLYD YISNPFLDSEFQDSEFASPESTSEFRKSAVVIIMVVLAVIVHIQQNWKKLSQWLELRKLSDKLDEEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52780			Protein of unknown function (D...		Potri.006G187000 [exp]	0	1
AT5G53110			RING/U-box superfamily protein...		Potri.015G017800 [exp]	1.00	0.9716
AT3G12830			SAUR-like auxin-responsive pro...		Potri.002G057500 [exp]	2.44	0.9649	SAUR13
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Potri.005G029200 [exp]	4.24	0.9650
AT2G34930			disease resistance family prot...		Potri.001G262800 [exp]	5.09	0.9536
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G102700 [exp]	5.47	0.9619
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G080500 [exp]	6.00	0.9643	CYP716B4
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Potri.006G037600 [exp]	6.00	0.9433
AT5G51160			Ankyrin repeat family protein ...		Potri.012G113800 [exp]	7.48	0.9618
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.016G074000 [exp]	8.94	0.9625
AT5G05340			Peroxidase superfamily protein...		Potri.006G107000 [exp]	11.48	0.9574	PRX1.13

Compare expression of checked genes

Potri.006G187000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.