Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58040 354 / 2e-102 FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIP1[V], FIP1[V], ATFIPS5, ATFIP1[V], FIP1[V], A homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) AT3G66652 75 / 4e-13 fip1 motif-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110100 [exp] 1816 / 0 AT5G58040 355 / 1e-102 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Potri.010G145150 [exp] 110 / 3e-24 AT5G58040 107 / 4e-23 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040030 [exp] 823 / 0 AT5G58040 389 / 5e-117 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10019610 [exp] 645 / 0 AT5G58040 412 / 6e-127 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10019609 [exp] 272 / 1e-80 AT5G58040 206 / 2e-58 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1) Lus10016905 [exp] 70 / 1e-11 AT3G66652 90 / 6e-18 fip1 motif-containing protein (.1.2) Lus10040031 [exp] 54 / 8e-09 AT5G58040 50 / 8e-09 homolog of yeast FIP1 [V], homolog of yeast FIP1 [V], homolog of yeast FIP1 [V] (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05182 [poplar] [flax] Fip1 Fip1 motif
Representative CDS sequence Show only first row Show all	>Potri.006G187400.1 pacid=42767764 polypeptide=Potri.006G187400.1.p locus=Potri.006G187400 ID=Potri.006G187400.1.v4.1 annot-version=v4.1 ATGGAAGACGACGACGAATTTGGAGATCTCTACACTGACGTCTTACGTCCATTCTCTTCATCCTCATCCTCTACTCCGCAACCAACACAACCTCTCTCTG CACCGTCTTATCTCCACCGTCCGATCGATATCAACGACGCTGTCAAAGACGACGATGACGAGATCCTCCACGGCAATCCTCCTGATCCAACCAATCAAAA CTCTATTCAAATTACCTCTTTTTCAGCTCCTCGAATTAGGGTTTTGGGAGATGCAGAATCGCCTATTAAAGCATCCATTGGCGACGACACAGAGGTCAGT TTTGATATCGAGGAGGTTAATACTGGGATTCTTGAAGATTCGGGCCCGATTATCCCTGGATTGACGGAAGATGATTCTAGAAAGATGGAAGCTTCTGCTG AGATCAGTGGCGGTGGTGGCGATTGGCAAGACGAGGAGGAGAGTGATAGCGAGGATGATTTGCAAATAGTGCTGAATGATAACACTCATCCTGGCGGGAC CATGGGAATTGATAGAGAGATCGGTGATGATGACGATGATGACGAGGATGGGGACCCGCTTGTGATTGTCGCTGATGGAGATGGACCGAATCAAGCGATA GAGGAGCAGGATTGGGGTGGCGGTGAGGATGGGGTTGCGGCTGCAGGAGGTGGGGCAGAAGGCGAGAGGAAAGAAGGAGGAGAAGCGGTGGGGAAAGGAA ATGCAGTGGTCGGACCGAAGATTGGGTATAGCAATCATGTTTATCATCATCATCCGTTTCATTCTCAGTTTAAGTATGTAAGACCTGGTGCAGCACCGAT GCCTGCAGCTACTAGTGTTGGTCCCGGAGGAACTCCAGGTCAAGTCCGTCCTCCTATGAACATGGGTGCTATGGCTGGTCGAGGTAGAGGTGACTGGCGA CCAGTAGGAATAAAAGGTGCCCCTCAAAAGAACTTTCATCCAGGATTTGGGGGGTCTGCTTGGGGTGCAGGGAGGGGTTTTGGCAGTGGAATGGAATTCA CGCTTCCTTCCCACAAGACCATATTTGATTTTGACATTGATGGCTTTGAGGAAAAGCCATGGAAATATCCTGGCGTGGACATATCGGACTACTTCAACTT TGGTTTGAATGAGGAGAGCTGGAAAGATTATTGCAAACAGCTGGAACAATATCGACTGGAGACTACAATGCAAAGCAAAATTCGTGTTTATGAAAGTGGG CGGGCAGAGCAGGAATACGATCCTGATTTGCCACCAGAACTAGCAGCGGCAACAGGTTTCCATGCTACAGCTGACAATTCAAATGCTGGAAAGTCAGACA TTGGACAGAGTGATTTGGCTAAAGGATCTGCTCGTATGCGGCCACAAATACCAACTGGAAGAGCAATACAAGTTGAAACTGGTTATGGTGAACGCATCCC CTCCATTGAAGGTCGAGCTCCTCGACTTCGTGATTCTGATGCCATCATAGAGATTGTCTGCCAGGGCTCTCTAGAAGATTCCCCCCCAAGAGATGGTGTC CAGGATGGAGCACACAATGATCCTCAAAAAGATGACTTTAAAGTGAGCGATGCATCTGAAGATGACATGGAACAGACAGAAAATGAATATGCTGGTGGTT TTCCACAGGCCTACAATGGTCGAAAGGGTGGGAGGAGAACACCTTACATGAATTCTGCCCACAACATGTCTGAGGGAGATGTTTTGCCCATCCATCCCAA AGCACCAGCTCCATACCACCAGACTGGTTCTAGGGGTCACCCTCCTTCCTACCCTGGTAGGGAATCTGGCACCCCTCATGAGGAAAGGCGGATGCAGGGA AGATCATGTGATAGTTCTCCTCATTTAACTCCTAGTCAAAACTCACGAGACAAGAAATTTCTTGATGATGTGGAGGAAGAATCAACTGAAAGTATGGACG ATAAACTCAGTCCACGGATATCATCTCCTATCACAGTTCGAGATGCAAGAGAGTTGAGCTCTGAGGAAAAAGATGATGTTGAGCCTTTGCAAGCTGAGGA AAGCTCTAGATTGGGAAGGGATGAAATGACTGAGAATGAAGAAACCACTAATGATAAGGATGGAAATGTGCACCATTCTACAAGGAAACAAAAGGTAAGT TCTCATGTCGAACAGCCTGCATTGCAACAGCTCGATGATGAGGAAGACTCAAAGGCTGCAAGAAGCAGTGAAAATAGCAAAGCAAGATCAGGCAGTAGCA AAGATTATCAGAAATGGCAAGATGGTGTTGAGGAGGAAGTTGTTCAAGATAGACGTTCTACACGCTCAGGGAGCATCAGACGGCACCTTGATGAAAATGA ACAGAATTTTCAAAGAAAGGATCGTGATGTGAGAAGAGAGATGGAAAGAAATCGTGGTGTGATAAGAGGGAGGGAGGATTCTTATCCTCATAGAGACCTG GATCCTAGCTTGCCCCATCATTTGCATATGAAGCATGAGAGCTATGATAAGCGAAAGGAGCGTGAAAATCCAGATATCTCTTGGCAACAAAGAGATGAAG ATCCACATAGCAGAAAACATAGAACTGAAGACAGGAAGAGGGAACACGGAGATGAAATGGGATCAAGGCACCGGGGTAAGATTCGGGAGACTGAGAGGAG TGACAAAGATGAACATCTTCATTCAAGGAAACAGTTAGAGAATGGCAGCTACAGGATCCATCATGATAAGGATGGCAGTTCACGGCACAGGGAAAGAGAT GACAATTTGAAGAGTAGGTTTGAAATGGTAGATGACTACCATAGCAAAAGGAGGAAAGATGAAGAATATGTGAAAAGAGAATATGCTGATAAGGAGGAGA TACTGCATGGCCACAGAGAAAATACCAGTCGCCGAAGGCACGAAAGAGATGATCAGCAAAGGATTAGAGACAATCTTGATGGTTATCACTCTGTTAAGCA TAAAGACGAGGTCTGGCTCCAAAGAGAGAGGGGTGAGAGGCAGAGGCAGAGGGAGAGGGAGAGGGAGGAGTTATATAGGGTAAAACAATCCAGTGAAGAA AATTTACCAAAACGAGAGAGAGAAGAAGGACGAGCATCTGCAAGGAGTGGGCGTGTTGTGGATGACAAAGCATGGGCTGGCCATGCTTGGGGGAAAGATG AATATAAAGTTTCTGATAAAGAGTACCAACTTAAAGATACAGTTCGAATCAGTGAACACCAGAAAAGAAGGGACCGAATGGAGGATGAAAGTCTTTCACA TCATAGGGGACAAGATGATGTTTATGCACGTGGAAATCAGTTTAGTAATGAAGAGAGAAGATCCAGGCAGGAAAGGTCAAGCTCTCGGGTTGATCGCACT GTAGATACTTCTGTTAGCCAAAGGGTGCATGAGAAGAAGCATAAAGAAAACCCAAGGAAGAATAAAGAATCTGATGGAGATCATGGCACTTGGGGCCCTT CCAAAAGAAACCAAGACAACCTGAATGGTCACAGTGATGAAACGGTTTTAAAACGCTCTCGTGAGCCAGGAAGCAGAGAGGCTGAGATCTTGATGCAATT GAACTCTTCCAAAAGACTCAAGAAAAATGCTTCCTCGGATGATGAACAACAAGATTCCAGGAGAGGACGCTCAAAATTGGAGCGTTGGACAAGCCATAAA GAGAGGGATTACAATATCAGCAAGGCATCAGCTTCCTTAAAGTTTAAAGAGACTGATAGGAATAACAATGGTGGATCTTTACAAGGCAGTAAACTTTCTG ATGAACCCCCTAAGAAAGTTGAGACTGTTGAGAAGCAGGCAAAAATCGAGACTGTTGAGAAGCATTGCACAGGTGAAGAGAAAGATGTTGCTGATGCAGA GAATAAGGATACTGATACAAAGCCATCGGGGGACCGGCACTTGGACACGGTTGAGAAGTTGAAGAAGCGGAGTGAGAGGTTCAAGCTTCCAATGCCAAGT GAGAAAGATGCCTTCTCAGTAAAAAAGATGGAGAGCGAGGCGGTGCCTTCTGTCAAACCTGAGACTCCTGCAGATTCAGAGATTAAACCAGAGCGGCCTC CTCGAAAACGAAGGTGGATCAGCAATTGA
AA sequence Show only first row Show all	>Potri.006G187400.1 pacid=42767764 polypeptide=Potri.006G187400.1.p locus=Potri.006G187400 ID=Potri.006G187400.1.v4.1 annot-version=v4.1 MEDDDEFGDLYTDVLRPFSSSSSSTPQPTQPLSAPSYLHRPIDINDAVKDDDDEILHGNPPDPTNQNSIQITSFSAPRIRVLGDAESPIKASIGDDTEVS FDIEEVNTGILEDSGPIIPGLTEDDSRKMEASAEISGGGGDWQDEEESDSEDDLQIVLNDNTHPGGTMGIDREIGDDDDDDEDGDPLVIVADGDGPNQAI EEQDWGGGEDGVAAAGGGAEGERKEGGEAVGKGNAVVGPKIGYSNHVYHHHPFHSQFKYVRPGAAPMPAATSVGPGGTPGQVRPPMNMGAMAGRGRGDWR PVGIKGAPQKNFHPGFGGSAWGAGRGFGSGMEFTLPSHKTIFDFDIDGFEEKPWKYPGVDISDYFNFGLNEESWKDYCKQLEQYRLETTMQSKIRVYESG RAEQEYDPDLPPELAAATGFHATADNSNAGKSDIGQSDLAKGSARMRPQIPTGRAIQVETGYGERIPSIEGRAPRLRDSDAIIEIVCQGSLEDSPPRDGV QDGAHNDPQKDDFKVSDASEDDMEQTENEYAGGFPQAYNGRKGGRRTPYMNSAHNMSEGDVLPIHPKAPAPYHQTGSRGHPPSYPGRESGTPHEERRMQG RSCDSSPHLTPSQNSRDKKFLDDVEEESTESMDDKLSPRISSPITVRDARELSSEEKDDVEPLQAEESSRLGRDEMTENEETTNDKDGNVHHSTRKQKVS SHVEQPALQQLDDEEDSKAARSSENSKARSGSSKDYQKWQDGVEEEVVQDRRSTRSGSIRRHLDENEQNFQRKDRDVRREMERNRGVIRGREDSYPHRDL DPSLPHHLHMKHESYDKRKERENPDISWQQRDEDPHSRKHRTEDRKREHGDEMGSRHRGKIRETERSDKDEHLHSRKQLENGSYRIHHDKDGSSRHRERD DNLKSRFEMVDDYHSKRRKDEEYVKREYADKEEILHGHRENTSRRRHERDDQQRIRDNLDGYHSVKHKDEVWLQRERGERQRQREREREELYRVKQSSEE NLPKREREEGRASARSGRVVDDKAWAGHAWGKDEYKVSDKEYQLKDTVRISEHQKRRDRMEDESLSHHRGQDDVYARGNQFSNEERRSRQERSSSRVDRT VDTSVSQRVHEKKHKENPRKNKESDGDHGTWGPSKRNQDNLNGHSDETVLKRSREPGSREAEILMQLNSSKRLKKNASSDDEQQDSRRGRSKLERWTSHK ERDYNISKASASLKFKETDRNNNGGSLQGSKLSDEPPKKVETVEKQAKIETVEKHCTGEEKDVADAENKDTDTKPSGDRHLDTVEKLKKRSERFKLPMPS EKDAFSVKKMESEAVPSVKPETPADSEIKPERPPRKRRWISN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.006G187400 [exp]	0	1
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.003G110100 [exp]	1.41	0.8826
AT1G18950			DDT domain superfamily (.1)		Potri.012G072200 [exp]	1.41	0.9020
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	5.00	0.8658
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	5.47	0.8275
AT2G33730			P-loop containing nucleoside t...		Potri.012G045800 [exp]	5.47	0.8814
AT3G25210			Tetratricopeptide repeat (TPR)...		Potri.002G248100 [exp]	7.07	0.8346
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.014G083700 [exp]	7.21	0.8712
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.002G140200 [exp]	7.87	0.8268
AT2G36950			Heavy metal transport/detoxifi...		Potri.006G124800 [exp]	8.00	0.8246
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	9.16	0.8590

Compare expression of checked genes

Potri.006G187400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.