Plant FIBer expression Database

Potri.006G187500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30993 177 / 4e-54 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G110300
[exp]
421 / 2e-149 AT4G30993 200 / 9e-63 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040035
[exp]
118 / 1e-31 AT4G30993 66 / 1e-12 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G187500.1 pacid=42768245 polypeptide=Potri.006G187500.1.p locus=Potri.006G187500 ID=Potri.006G187500.1.v4.1 annot-version=v4.1
ATGGAAAAGAAACGATCTTGGGCTTGTACTTTTGTTTTGCAAGTTTCTCTCTTTATTGCCTTCTACCTTGCTCTCAACTTGGATCAGCCTCAAACGTCCC
TTTATAATAGCAGAAAAGGCACTAGAACACCTCTTGATGTTTACTTTCTTAGTGTTAGAGGAGGATATAGACCCCTTAACCAACGAGCCCTTCTTCTCAA
ACAGATGGAGAAGGTGGCTAACATTTACAAGGCAAGGTTTGTGATGAACATTAGTGAGCTGGGAGAAGATGATCCACTCACCCAGAATGCAAGCAGGCTC
TTCCCACCACAGAAAATCCCCTGGTATTCTACGAGAGTCTCGAAAGGCAGGGAAGGTGGATGCTTCCTGGAGCAGATCAACATAACTTGTGGGAAAACGT
TAACAGTTGTTGGTTTGGATACCGGGCTGTTACAGGATTTCATGGGATCAACGAGTGGCTTTAAGAATGGTCAGTTAAACTGGCTGACAGAAACACTAGA
AGCAACCACTAATAGCTGGATCATAGTTTCTGGATATCACCCTGTGGTTATCTGTGACAAGGAGCGAGTGGAAGCAAAGCAAATTTATGGGGCTTTACAC
AATATCTTTATGAAATATGGAGTGAATGCGTACATTAGCAGGCAGGGTTGCAATGGTCATACCGTTCAAGATGGTGTGGCATACATAGGCATTGCAGACT
CTATTGAGAGTGAACCTTTGAATTCCTCAAATGGAAGATTGGCTTTCCGAAACTTCCACAGAGATACGGTGAATGATTGGTTTCTTCTCCACAGAGTTGG
CTCCCTCGAGATTACAACCTATTTTGTAAGCTCAGCAGGGAAGATTGTGAATAAAGCTGTAATCGAACAGCGTGGTAAGGTGGCCATGTAA
AA sequence
>Potri.006G187500.1 pacid=42768245 polypeptide=Potri.006G187500.1.p locus=Potri.006G187500 ID=Potri.006G187500.1.v4.1 annot-version=v4.1
MEKKRSWACTFVLQVSLFIAFYLALNLDQPQTSLYNSRKGTRTPLDVYFLSVRGGYRPLNQRALLLKQMEKVANIYKARFVMNISELGEDDPLTQNASRL
FPPQKIPWYSTRVSKGREGGCFLEQINITCGKTLTVVGLDTGLLQDFMGSTSGFKNGQLNWLTETLEATTNSWIIVSGYHPVVICDKERVEAKQIYGALH
NIFMKYGVNAYISRQGCNGHTVQDGVAYIGIADSIESEPLNSSNGRLAFRNFHRDTVNDWFLLHRVGSLEITTYFVSSAGKIVNKAVIEQRGKVAM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30993 Calcineurin-like metallo-phosp... Potri.006G187500
[exp]
0 1
AT1G67040 unknown protein Potri.017G116000
[exp]
3.87 0.8810
AT1G48880 TBL7 TRICHOME BIREFRINGENCE-LIKE 7 ... Potri.002G071900
[exp]
8.24 0.8954
AT3G50590 Transducin/WD40 repeat-like su... Potri.005G136300
[exp]
15.81 0.8853
AT5G56750 NDL1 N-MYC downregulated-like 1 (.1... Potri.018G067700
[exp]
19.59 0.8600
AT3G20860 ATNEK5 NIMA-related kinase 5 (.1) Potri.003G205400
[exp]
19.87 0.8232
AT4G26340 F-box/RNI-like/FBD-like domain... Potri.011G024200
[exp]
22.91 0.8258
AT1G14540 Peroxidase superfamily protein... Potri.008G022264
[exp]
24.69 0.8608
AT1G17280 UBC34 ubiquitin-conjugating enzyme 3... Potri.003G073100
[exp]
26.45 0.8729
AT2G23090 Uncharacterised protein family... Potri.014G018400
[exp]
27.00 0.8469
AT5G55990 ATCBL2, CBL2 calcineurin B-like protein 2 (... Potri.006G002900
[exp]
28.24 0.8585

Potri.006G187500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.