Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58170 894 / 0 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 889 / 0 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G66970 597 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT5G55480 593 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT4G26690 589 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66980 570 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 535 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT1G74210 104 / 9e-24 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 87 / 4e-18 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G110600 [exp] 1330 / 0 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360700 [exp] 612 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360800 [exp] 610 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.015G058400 [exp] 92 / 9e-20 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019605 [exp] 709 / 0 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 622 / 0 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10032576 [exp] 615 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040036 [exp] 594 / 0 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10014903 [exp] 592 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 591 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 574 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10018042 [exp] 513 / 1e-172 AT5G55480 721 / 0.0 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) Lus10043171 [exp] 488 / 2e-164 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019606 [exp] 473 / 7e-158 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [poplar] [flax] PLC PF03009 [poplar] [flax] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Potri.006G187600.1 pacid=42769350 polypeptide=Potri.006G187600.1.p locus=Potri.006G187600 ID=Potri.006G187600.1.v4.1 annot-version=v4.1 ATGATCAAGTATCTGCTTTTAGTTTCCTTGGTTATCCATGCAACATTGGCGAATTCAGAATCTGCTTCCAAGAAATGGCTAACACTAAATGGCCAGCGAC CTTCTGTGATAGCCCGGGGAGGGTTCTCGGGGCTTTTCCCTGAATCCAGTGACTTTGCAAATCAAATGGCGCTTGGGACAAGCGTCCATGATGTGGTTGT GCTCTGCAATTTACAACTAACAAAAGATGGGGTTGGGATTTGCCAGGGAGATATCAGGCTTGACAACACAACAAATATAGCAATGTTATTTGAAAAGGGA TCAAAAACCTACAAGGTAAATGGGCAGGATCTTACTGGGTGGTTCGCATTAGATTTTACAGCTGATCAGCTCCTTGCCAATGTATCTTTGGTGCAAAATA TATTCTCTCGGCCGAGTGCATTCGACGGGATGCTGCCCATGTCTACTGTTGACGATGTCAGAAATTCCAATCCCCCAGCATTTTGGTTGAATGTTCAGTA CGATGCGTTCTATACGGAAAACAAACTGAGTGTCACAAATTACATTCAAAAGGCAACGAGACTGCAGGGTGTAAATTACATTTCTTCTCCTGAGATTGGT TTCTTAAAGAGAATGAATGGATTAGTGAACAAGGCTAAGACCATGCTCATCTTTGTGTTCCTGGACAAAAAGGCAACTGAACCCACAAGCAGTCAAACTT ATGGTTCAATATTGGGAAATCTTGCCACGATCAAGAAATTCGCTTCCGGGATTGTTGTCCCAAAAGATTACATATGGCCTGTTAATACGGCTAATTATCT CGATGCTCCCACTAGTCTAGTAAATGATGCTCATAAACTGGGTCTTGAAGTATATGCTTCTGGCTTCGCGAACGACTTCACTACAAGTTATAATTATAGT TATGATCCATCAGCCGAGTATCTGCAATTCATTGATAATTCTCAGTTTTCTGTTGATGGGTTGATTACAGATTTTCCTCCTACAGCATCAGAAGCTGTTG CATGTTTTGCTCAGTACCCTGATATCAAACCTACAAAAGGACAAGCTTTGATCATAACTCACAATGGAGCAAGTGGAGTTTATGCTGGGAGCACCGATCT TGCTTATCAGCAAGGATTAGAAGATGGAGCTGACATAATAGATTGCTCTGTTCAAATGTCAAAGGATGGAGTGGCTTTCTGCTTGGATTCGGTGGATGTT ACCAGAGATACAACTGCTGCAGCTACCTTTATGTCTCTTTCTACCACTATCCCTGAAATTCAACAGTCTTCTGGAATTTTTTCGTTTGACCTTTCATGGA GCGATATTCAAGCCTTGCAACCTCAATTGACAAGTCCTTTTGAGAATAAGGGTGGCTTGCCAAGAAACCCTGCAAACAAGAACAAGGGTAAATTTTTAAC TCTTGCTGAATTTCTAGAATTGGCTAAAGTAAAGGCAGTTACCGGGATTTTAATCAACATAGAGAATGCCGCTTACCTAGCATCACAGAAGGGTCTTGAC ATAGTATCTGCTGTTAACACTGCCTTGAGCAATGCTACATTTGACAAGCAATCCACTCAAAAAGTCCTGATCCAATCAGACGACACTTCAGTGTTGTCCA AGTTTCAGAATGTCCCAGCATACACTAGAGTGCTATATCTTAAAGATGAAATCAGTGATGCACCCAAGACACCAGTGGGTGAGATAAAAAAATATGCAGA TGCAGTAACTCTGCCAAGATTCTCCATCGTGCCCACCATTGATGGCTTCACTACAGCAACAACCAAAGTCGTAAATGAAATGCATGCTGCGAATATCTCA GTATATGTCACAGTTCTAAGGAATGAATTTGTTACCCTTGCATTTGATTACTTTGCGGATCCTACAATAGAGATTGCAACTTACACTTCTGGGATTGGCG TTGATGGAATCATAACCGAGTACCCAGCAACTGCAAGCAGATATTTAAGAAATCCATGTTCTTCTGATTCCATGCCCGAGAGCTCATACAGCATCATTCC AGCTGAAGCTGGTAGTCTGCTGAAGACAGTTCCTGAAGAAACACAGCCCCCAGCAAGTTCCCCAACACCAGCCTTGGATGTTGCAGATATTGTCGACCCA CCACTCCCTGCAGTGACCAAACCTGCCTCCCCTCCTCCTGCAACTTCTCCTCGTTCAAGTGCCCTAGCAAACATTGCTAACGTGGGCCTTTCTTTAGTAG CAATCGTGGTGTTTAGTTCGCTGTCTTTGATGTGA
AA sequence Show only first row Show all	>Potri.006G187600.1 pacid=42769350 polypeptide=Potri.006G187600.1.p locus=Potri.006G187600 ID=Potri.006G187600.1.v4.1 annot-version=v4.1 MIKYLLLVSLVIHATLANSESASKKWLTLNGQRPSVIARGGFSGLFPESSDFANQMALGTSVHDVVVLCNLQLTKDGVGICQGDIRLDNTTNIAMLFEKG SKTYKVNGQDLTGWFALDFTADQLLANVSLVQNIFSRPSAFDGMLPMSTVDDVRNSNPPAFWLNVQYDAFYTENKLSVTNYIQKATRLQGVNYISSPEIG FLKRMNGLVNKAKTMLIFVFLDKKATEPTSSQTYGSILGNLATIKKFASGIVVPKDYIWPVNTANYLDAPTSLVNDAHKLGLEVYASGFANDFTTSYNYS YDPSAEYLQFIDNSQFSVDGLITDFPPTASEAVACFAQYPDIKPTKGQALIITHNGASGVYAGSTDLAYQQGLEDGADIIDCSVQMSKDGVAFCLDSVDV TRDTTAAATFMSLSTTIPEIQQSSGIFSFDLSWSDIQALQPQLTSPFENKGGLPRNPANKNKGKFLTLAEFLELAKVKAVTGILINIENAAYLASQKGLD IVSAVNTALSNATFDKQSTQKVLIQSDDTSVLSKFQNVPAYTRVLYLKDEISDAPKTPVGEIKKYADAVTLPRFSIVPTIDGFTTATTKVVNEMHAANIS VYVTVLRNEFVTLAFDYFADPTIEIATYTSGIGVDGIITEYPATASRYLRNPCSSDSMPESSYSIIPAEAGSLLKTVPEETQPPASSPTPALDVADIVDP PLPAVTKPASPPPATSPRSSALANIANVGLSLVAIVVFSSLSLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Potri.006G187600 [exp]	0	1
AT4G01580	B3		AP2/B3-like transcriptional fa...		Potri.007G035700 [exp]	9.16	0.6536
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Potri.019G013800 [exp]	9.38	0.6256
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.002G060400 [exp]	9.43	0.6985
AT1G21280			unknown protein		Potri.013G092801 [exp]	16.37	0.5632
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	18.33	0.5977
AT3G60650			unknown protein		Potri.002G144400 [exp]	18.70	0.5740
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.013G153200 [exp]	21.79	0.6028
					Potri.013G104501 [exp]	21.90	0.5963
					Potri.005G043600 [exp]	27.91	0.5845
AT4G27790			Calcium-binding EF hand family...		Potri.015G010300 [exp]	31.24	0.5677

Compare expression of checked genes

Potri.006G187600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.