Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31020 440 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 416 / 8e-148 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 326 / 4e-111 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 321 / 3e-109 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G01690 319 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 318 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G24760 318 / 6e-108 alpha/beta-Hydrolases superfamily protein (.1) AT1G66900 313 / 2e-107 alpha/beta-Hydrolases superfamily protein (.1) AT1G32190 303 / 1e-101 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G13610 280 / 2e-93 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G111400 [exp] 516 / 0 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G340000 [exp] 328 / 5e-112 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G136400 [exp] 327 / 4e-111 AT1G32190 412 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G097300 [exp] 322 / 7e-110 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.015G087100 [exp] 322 / 8e-110 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.017G102500 [exp] 321 / 7e-109 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 320 / 1e-108 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G117633 [exp] 318 / 3e-108 AT5G38220 468 / 9e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.004G112300 [exp] 318 / 9e-108 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040038 [exp] 443 / 3e-158 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 437 / 7e-156 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 325 / 1e-110 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 320 / 9e-109 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 315 / 5e-107 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 309 / 1e-104 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10030951 [exp] 306 / 6e-103 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 305 / 2e-102 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10036842 [exp] 296 / 6e-99 AT3G30380 423 / 2e-147 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040096 [exp] 293 / 1e-97 AT1G32190 452 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.006G188100.1 pacid=42770590 polypeptide=Potri.006G188100.1.p locus=Potri.006G188100 ID=Potri.006G188100.1.v4.1 annot-version=v4.1 ATGGGAAATGTAACGTCAAGTGTGGCAGCAAAATTTGCGTTCTTCCCGCCAGACCCCCCAACGTATGATGTGTTTAGAGAGCGAGATGGGAGGCTGGCGT TACCAGGTGTAACTGCAGACAAGAACATGGATGTTCACTTGTTGGAAACTAAAGTTGGAAACAAGATTGTGGCTACGTTTTGGAAACACCCTTTTGCAAG ATTCACAGTTTTGTACTCTCATGGAAATGCTGCAGACCTTGGACAAATGCATGAGCTTTTCATTGAACTTAGAGCTCATTTGAGAGTCAATATTATGAGC TATGATTATTCTGGATATGGAGCATCTTCTGGCAAGCCATCTGAGTTCAACACATACCATGACATTGAGGCTACGTACAATTGTTTGAAGAAGGATTATG GGATAAAGCAGGAAGACTTGATCGTGTATGGTCAATCTGTTGGAAGTGGTCCTACCCTGCACTTGGCTTCTCGCTTACAGAGGTTGAGAGGTGTTGTTCT TCACAGTGCAATTCTTTCAGGCATAAGGGTCTTGTATCCTGTCAAGATGACATTTTGGTTTGACATTTTCAAGAATATAGACAAGATACGACTTGTCAGC TGCCCTGTTCTGGTTATCCATGGAACAAATGATGATATTGTTGATCTGTCCCATGGAAAGCGCCTGTGGGAACTTGCCAAGGAAAAATATGATCCCTTAT GGGTCAAAGGTGGTGGTCATTGCAACCTGGAAACTTATCCAGAGTACATCAAGCACTTGCGAAAGTTCATAAATTCCATGGAGAAAATCTCCATGGTGAA ACCATCAAAGAAACTCACTCAGAACCAGAGTATTGAAGTCAAACACAACAAATGCTTAAGATTTGGTAAAACTTAA
AA sequence Show only first row Show all	>Potri.006G188100.1 pacid=42770590 polypeptide=Potri.006G188100.1.p locus=Potri.006G188100 ID=Potri.006G188100.1.v4.1 annot-version=v4.1 MGNVTSSVAAKFAFFPPDPPTYDVFRERDGRLALPGVTADKNMDVHLLETKVGNKIVATFWKHPFARFTVLYSHGNAADLGQMHELFIELRAHLRVNIMS YDYSGYGASSGKPSEFNTYHDIEATYNCLKKDYGIKQEDLIVYGQSVGSGPTLHLASRLQRLRGVVLHSAILSGIRVLYPVKMTFWFDIFKNIDKIRLVS CPVLVIHGTNDDIVDLSHGKRLWELAKEKYDPLWVKGGGHCNLETYPEYIKHLRKFINSMEKISMVKPSKKLTQNQSIEVKHNKCLRFGKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.006G188100 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G070000 [exp]	9.00	0.6556
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360700 [exp]	14.49	0.6178
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	15.84	0.6682
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	16.43	0.6460
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.018G053640 [exp]	40.81	0.6425
AT3G14172			unknown protein		Potri.013G091900 [exp]	44.07	0.6005
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.005G250600 [exp]	59.14	0.5539
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Potri.003G195700 [exp]	60.62	0.6062	Pt-NQR.3
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Potri.001G248200 [exp]	137.06	0.5489
AT1G11880			transferases, transferring hex...		Potri.003G216900 [exp]	143.24	0.5203

Compare expression of checked genes

Potri.006G188100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.