Plant FIBer expression Database

Potri.006G188200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G58200 367 / 3e-127 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G111500
[exp]
146 / 8e-44 AT5G58200 61 / 1e-12 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016863
[exp]
433 / 6e-153 AT5G58200 369 / 2e-128 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.006G188200.1 pacid=42768467 polypeptide=Potri.006G188200.1.p locus=Potri.006G188200 ID=Potri.006G188200.1.v4.1 annot-version=v4.1
ATGATAAGCTTAAGCGCGTTAATACACGCGCCAGCTCCCTGTTTTATCTCCACTACTCAACGCTCCACTTCGTCCCCCGACCCGACCACCGTACGCTCCT
CCTCAATGGCAGCCTCCGCCCGAATAGCAGTCGTTGGAGACGTTCATGATGATTGGAATCTTGAAGAAGATTCAAAAGCACTTCAACTTTTACAGCCAGA
TCTGGTGCTCTTCACAGGTGACTTTGGTAATGAGAATGTGGAACTCGTCCAAAGCATTGCGGATCTTAATTTACCTAAAGTAGTTATCTTAGGAAACCAC
GATTCATGGAAGACTCAACATTTTTCAGGAAAGAGGAAGGATGGTGTTCAACGTCAGCTGGAATGTCTTGGCGAAGAGCATGTAGCTTACAAGAGATTAG
ATTTCCCTACACTAAAACTCAGTGTAGTTGGTGGACGGCCATTTTCTTGTGGTGGTGAGCAGATATTCCGGAGAAGTCTTCTCTCTGCAAGATATGGAGT
CCTAGACATGGATGGAAGTGCTGATAGAATCTATAATGCTGCTTTGGGCACTCCAGAAGACCATATGGTTATATTTCTTGCACATAATGGACCAACAGGC
CTTGGTTCTAACTTGAATGACATATGCGGGAAAGATTGGGTATTTGGAGGTGGTGACCATGGTGATCCAGATCTAGCACAAGCCATATCCCATCTAAAAG
AGACTACCAAGATCAGTATTCCCCTGGTTGTGTTTGGTCACATGCATAAAGAGCTAGCATATGGAAATGGTCTTCGGAAAATGATTGTGGTTGGTGCTGA
CAAGACTATATACCTGAATGGGGCCATCGTTCCTCGAGTTCGAAGATTAGTTGCTGAACAAGGAACTGACAACACAAACTTTATGAATAACGAAACTTCA
GTGTTTTCCCCAGGGTCTAGAGGCACAATGCGAGCATTCACTTTAGTGGAGATTCTGGAAGGGAGAGTGGATAAAATTGCAGAGACCTGGGTTTCTGTTA
TTGAAGATGAGACTGCTATAGGAGAGGAGCATGTATTATTTCAACGTGGCAATTAG
AA sequence
>Potri.006G188200.1 pacid=42768467 polypeptide=Potri.006G188200.1.p locus=Potri.006G188200 ID=Potri.006G188200.1.v4.1 annot-version=v4.1
MISLSALIHAPAPCFISTTQRSTSSPDPTTVRSSSMAASARIAVVGDVHDDWNLEEDSKALQLLQPDLVLFTGDFGNENVELVQSIADLNLPKVVILGNH
DSWKTQHFSGKRKDGVQRQLECLGEEHVAYKRLDFPTLKLSVVGGRPFSCGGEQIFRRSLLSARYGVLDMDGSADRIYNAALGTPEDHMVIFLAHNGPTG
LGSNLNDICGKDWVFGGGDHGDPDLAQAISHLKETTKISIPLVVFGHMHKELAYGNGLRKMIVVGADKTIYLNGAIVPRVRRLVAEQGTDNTNFMNNETS
VFSPGSRGTMRAFTLVEILEGRVDKIAETWVSVIEDETAIGEEHVLFQRGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G58200 Calcineurin-like metallo-phosp... Potri.006G188200
[exp]
0 1
AT5G47840 AMK2 adenosine monophosphate kinase... Potri.019G078200
[exp]
3.46 0.6760
AT5G27830 unknown protein Potri.013G014800
[exp]
4.47 0.7250
AT3G09085 Protein of unknown function (D... Potri.004G103400
[exp]
9.79 0.7278
AT1G53240 mMDH1 mitochondrial malate dehydroge... Potri.004G054200
[exp]
11.61 0.6912
AT2G17870 ATCSP3 ARABIDOPSIS COLD SHOCK DOMAIN ... Potri.002G086900
[exp]
12.36 0.6684
AT2G38940 PHT1;4, ATPT2 ARABIDOPSIS THALIANA PHOSPHATE... Potri.010G071500
[exp]
13.67 0.6816
AT5G42370 Calcineurin-like metallo-phosp... Potri.005G259700
[exp]
19.20 0.6489
AT2G30520 RPT2 ROOT PHOTOTROPISM 2, Phototrop... Potri.019G131600
[exp]
21.67 0.7312 RPT2.3
AT5G55510 Mitochondrial import inner mem... Potri.011G088500
[exp]
22.80 0.6924
AT1G52340 SIS4, SDR1, ISI... SHORT-CHAIN DEHYDROGENASE REDU... Potri.001G024300
[exp]
24.37 0.7129 ABA2.1

Potri.006G188200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.