Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	AHA6.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42640 1602 / 0 AHA8 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) AT2G07560 1579 / 0 AHA6 H\(+\)-ATPase 6, H\(+\)-ATPase 6, H(+)-ATPase 6 (.1) AT1G80660 1555 / 0 AHA9 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) AT4G30190 1508 / 0 PMA2, AHA2 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) AT2G18960 1498 / 0 OST2, PMA, AHA1 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) AT5G57350 1492 / 0 AHA3, ATAHA3 H\(+\)-ATPase 3, ARABIDOPSIS THALIANA ARABIDOPSIS H\(+\)-ATPASE, H\(+\)-ATPase 3, H(+)-ATPase 3 (.1), H(+)-ATPase 3 (.2) AT5G62670 1472 / 0 AHA11 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) AT3G47950 1469 / 0 AHA4 H\(+\)-ATPase 4, H\(+\)-ATPase 4, H(+)-ATPase 4 (.1) AT2G24520 1458 / 0 AHA5 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) AT3G60330 1316 / 0 AHA7 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112400 [exp] 1716 / 0 AT3G42640 1528 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G005900 [exp] 1659 / 0 AT3G42640 1543 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Potri.006G275000 [exp] 1558 / 0 AT2G24520 1589 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.018G090300 [exp] 1551 / 0 AT2G18960 1560 / 0.0 PLASMA MEMBRANE PROTON ATPASE, OPEN STOMATA 2, H\(+\)-ATPase 1, H\(+\)-ATPase 1, H(+)-ATPase 1 (.1) Potri.006G165900 [exp] 1551 / 0 AT4G30190 1576 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Potri.018G006000 [exp] 1529 / 0 AT2G24520 1554 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Potri.012G071600 [exp] 1462 / 0 AT5G62670 1637 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.015G066000 [exp] 1462 / 0 AT5G62670 1640 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Potri.014G046300 [exp] 1405 / 0 AT3G60330 1462 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024105 [exp] 1564 / 0 AT1G80660 1657 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026946 [exp] 1536 / 0 AT2G24520 1634 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10001631 [exp] 1535 / 0 AT4G30190 1679 / 0.0 PLASMA MEMBRANE PROTON ATPASE 2, H\(+\)-ATPase 2, H\(+\)-ATPase 2, H(+)-ATPase 2 (.1), H(+)-ATPase 2 (.2) Lus10003259 [exp] 1457 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042183 [exp] 1457 / 0 AT5G62670 1797 / 0.0 H\(+\)-ATPase 11, H\(+\)-ATPase 11, H(+)-ATPase 11 (.1) Lus10042445 [exp] 1392 / 0 AT1G80660 1490 / 0.0 H\(+\)-ATPase 9, H\(+\)-ATPase 9, H(+)-ATPase 9 (.1), H(+)-ATPase 9 (.2) Lus10026224 [exp] 1390 / 0 AT2G24520 1509 / 0.0 H\(+\)-ATPase 5, H\(+\)-ATPase 5, H(+)-ATPase 5 (.1) Lus10019593 [exp] 1383 / 0 AT3G42640 1455 / 0.0 H\(+\)-ATPase 8, H\(+\)-ATPase 8, H(+)-ATPase 8 (.1) Lus10040166 [exp] 1356 / 0 AT3G60330 1533 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2) Lus10004370 [exp] 1353 / 0 AT3G60330 1529 / 0.0 H\(+\)-ATPase 7, H\(+\)-ATPase 7, H(+)-ATPase 7 (.1), H(+)-ATPase 7 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00122 [poplar] [flax] E1-E2_ATPase E1-E2 ATPase PF00690 [poplar] [flax] Cation_ATPase_N Cation transporter/ATPase, N-terminus CL0137 [poplar] [flax] HAD PF00702 [poplar] [flax] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G188600.2 pacid=42770534 polypeptide=Potri.006G188600.2.p locus=Potri.006G188600 ID=Potri.006G188600.2.v4.1 annot-version=v4.1 ATGGGCGACGTTTCTTTGGAACAGATAAAGAATGAGAATATTGATCTTGAGAGAATTCCTGTTGAGGAGGTATTTCAGCAGCTAAGATGTACAAAAGAAG GATTGAGCACCGCACAAGGTGAGGAGAGGCTTAAGATCTTTGGCCCGAACAAGCTTGAGGAGAAAAGAGAGAGCAAATTCCTCAAGTTTTTGGGTTTCAT GTGGAACCCGTTATCATGGGTCATGGAAGCAGCTGCCATAATGGCCATTGCTTTGGCTAATGGAGGAGGCAAGCCTCCGGACTGGCAGGATTTTGTTGGT ATCGTTGTATTGCTTATCATCAACTCCACCATCAGCTTCATCGAGGAAAACAATGCAGGCAACGCAGCTGCCGCTTTGATGGCTGGTCTTGCCCCCAAAA CAAAGGTTTTGAGGGATGGAAAATGGATGGAGGAAGATGCATCAATTCTGGTACCAGGAGATATGATCAGCATCAAGTTGGGAGATATCGTCCCAGCTGA TGCTCGTCTCATGAAAGGAGATCCGCTCAAGATTGATCAGTCTGCTCTGACTGGTGAATCCCTTCCAGTTACAAAGCATCCCGGCGAAGGGGTTTTCTCT GGCTCAACCTGCAAGCAAGGTGAGATTGAGGCTGTTGTTATTGCTACTGGTGTTCACACCTTCTTCGGCAAGGCAGCTCACCTTGTTGACAGCACCAATA ACGTTGGCCATTTCCAAAAGGTGTTGACAGCTATTGGTAACTTCTGTATCTGCTCAATCGCTATCGGTATGCTGGTTGAGATTATAGTGATGTACCCAAT CCAGAACAGGAGGTACAGAGAGGGTATTGATAACCTCTTGGTGCTTCTCATTGGAGGTATCCCAATTGCTATGCCTACAGTCTTGTCAGTGACAATGGCT ATTGGGTCTCACCGTCTATCACAGCAAGGTGCCATCACCAAGAGAATGACCGCTATTGAAGAAATGGCTGGAATGGATGTCTTATGTAGTGACAAGACCG GAACTCTAACCCTCAACAAGCTTACCGTGGACAAGAGCCTTATTGAGGTGTTTATAAAGGATATGGACAAGGATACCCTTCTATTACTTGCTGCTAGGGC TTCCAGAATTGAGAATCAGGATGCCATTGATGCTTCAATTGTTGGGATGTTGGGCGACCCCAAGGAGGCAAGAGCAGAAATCACCGAGGTGCATTTCTTA CCCTTCAACCCTGTGGAAAAGCGCACTGCAATCACTTACTATGACAACAACGGTGACTGGCACAGAAGCAGCAAGGGAGCTCCTGAGCAGATTATCGAAC TCTGCAACGTAAAAGGGGAGACGAAGAAAAAGGCCCATGAAATCATTGACAACTTTGCCGAGCGTGGCCTTCGTTCCCTAGGAGTTGCTCGCCAGAGAAT TCCAGAGAAGACCAAGGAAAGTGAAGGAGCACCGTGGGAGTTTGTGGGTCTCTTGCCTCTTTTCGACCCTCCAAGGCATGATAGTGCTGAGACTATCCGT CGAGCCCTTGACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCTATTGGCAAAGAGACTGGCCGCAGGCTTGGGATGGGCACAAACATGT ATCCTTCATCATCTCTCCTTGGTAATAGCAAGGATGAGAGCATTTCTGGCATTCCAGTTGATGAGCTCATCGAGAAAGCTGATGGATTTGCTGGAGTCTT CCCTGAACACAAGTATGAGATTGTGAAGAAGCTACAAGAGAGGAAGCATATCTGTGGTATGACAGGAGATGGTGTTAACGATGCCCCGGCATTGAAGAAG GCAGACATTGGAATTGCTGTGGCAGACGCAACTGATGCTGCCAGGAGTGCTTCGGATATTGTCTTGACAGAACCAGGATTGAGTGTTATTATTAGCGCTG TATTGACAAGCAGAGCCATCTTTCAGAGGATGAAGAACTACACAATCTATGCTGTTTCCATCACAATTCGTATCGTGCTGGGATTCTTGCTTGTTGCACT TATTTGGAAGTTCGACTTCTCGCCATTCATGGTTCTGATCATTGCTATTCTCAATGACGGAACCATCATGACCATCTCCAAAGATAGAGTCAAGCCATCT CCTGTGCCCGACTCATGGAAGCTCAAGGAAATTTTCGCCACAGGTGTTGTCCTTGGAACTTACATGGCAATCATGACTGTGCTGTTCTTCTGGCTTGCTC ATGACACTGATTTTTTCCCCGAGAAGTTTGGTGTGAGGACAATCAGAGGTAAACCAGATGAGCTTACAGCAGCTCTTTACCTTCAAGTGAGCATCATCAG TCAAGCACTCATCTTTGTAACCAGGTCAAGGAGCTGGTCCTTTGTTGAATGCCCTGGTCTCTTGCTTGTCAGTGCTTTCATTGCAGCACAGTTGGTGGCG ACTCTCATTGCTGTGTATGCAAGCTGGTCCTTTGCAAGAATCGAAGGCATTGGTTGGGGATGGGCAGGAATCATCTGGCTTTTTAGCATTATCACCTACA TCCCTCTTGATATCATAAAGTTCATTATCCGCTATGCATTGACTGGGAAGGCCTGGGATAATATGCTACAAAACAAGACTGCTTTCACAAACAAGAAGGA CTATGGAAAGGGTGAGAGGGAGGCTCAATGGGCTACTGCTCAACGTACTCTTCACGGTCTTCAACCTCCAGAAACCATGTTCAATGACAAGACCACCTAC AGAGAGTTGAGTGAGCTTGCAGAGCAGGCTAAGAAGCGTGCCGAAGTAGCAAGGCTCAGAGAGCTTCACACGTTGAAGGGACATGTTGACTCAGTGGTTA AGATGAAGGGACTTGACATTGAGACCATCCAACAACACTACACAGTCTAA
AA sequence Show only first row Show all	>Potri.006G188600.2 pacid=42770534 polypeptide=Potri.006G188600.2.p locus=Potri.006G188600 ID=Potri.006G188600.2.v4.1 annot-version=v4.1 MGDVSLEQIKNENIDLERIPVEEVFQQLRCTKEGLSTAQGEERLKIFGPNKLEEKRESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVG IVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWMEEDASILVPGDMISIKLGDIVPADARLMKGDPLKIDQSALTGESLPVTKHPGEGVFS GSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQKVLTAIGNFCICSIAIGMLVEIIVMYPIQNRRYREGIDNLLVLLIGGIPIAMPTVLSVTMA IGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFIKDMDKDTLLLLAARASRIENQDAIDASIVGMLGDPKEARAEITEVHFL PFNPVEKRTAITYYDNNGDWHRSSKGAPEQIIELCNVKGETKKKAHEIIDNFAERGLRSLGVARQRIPEKTKESEGAPWEFVGLLPLFDPPRHDSAETIR RALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGNSKDESISGIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKK ADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFLLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPS PVPDSWKLKEIFATGVVLGTYMAIMTVLFFWLAHDTDFFPEKFGVRTIRGKPDELTAALYLQVSIISQALIFVTRSRSWSFVECPGLLLVSAFIAAQLVA TLIAVYASWSFARIEGIGWGWAGIIWLFSIITYIPLDIIKFIIRYALTGKAWDNMLQNKTAFTNKKDYGKGEREAQWATAQRTLHGLQPPETMFNDKTTY RELSELAEQAKKRAEVARLRELHTLKGHVDSVVKMKGLDIETIQQHYTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G188600 [exp]	0	1	AHA6.4
AT4G27640			ARM repeat superfamily protein...		Potri.010G169800 [exp]	9.59	0.7082
AT5G66960			Prolyl oligopeptidase family p...		Potri.007G035900 [exp]	11.04	0.7242
AT4G16660			heat shock protein 70 (Hsp 70)...		Potri.006G022100 [exp]	12.60	0.7051
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	18.97	0.6641
AT4G18180			Pectin lyase-like superfamily ...		Potri.009G169100 [exp]	29.93	0.5622
AT2G47960			unknown protein		Potri.004G040500 [exp]	32.86	0.6370
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Potri.013G101601 [exp]	34.77	0.6797
AT5G13890			Family of unknown function (DU...		Potri.002G237200 [exp]	36.66	0.6365
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Potri.003G173900 [exp]	46.43	0.6608
AT3G08950		HCC1	homologue of the copper chaper...		Potri.016G118700 [exp]	48.40	0.6835

Compare expression of checked genes

Potri.006G188600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.