DCL905 (Potri.006G188800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol DCL905
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G20320 1733 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2)
AT3G03300 656 / 0 ATDCL2, DCL2 dicer-like 2 (.1.2.3)
AT3G43920 363 / 1e-102 DCL3, ATDCL3 dicer-like 3 (.1.2.3)
AT1G01040 334 / 7e-93 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
AT4G15417 115 / 6e-28 ATRTL1 RNAse II-like 1 (.1)
AT5G45150 111 / 2e-24 RTL3 RNAse THREE-like protein 3 (.1)
AT3G20420 105 / 1e-23 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
AT1G80650 78 / 8e-16 RTL1 RNAse THREE-like protein 1 (.1)
AT1G35530 67 / 2e-10 DEAD/DEAH box RNA helicase family protein (.1.2)
AT4G00420 62 / 2e-10 Double-stranded RNA-binding domain (DsRBD)-containing protein (.1), Double-stranded RNA-binding domain (DsRBD)-containing protein (.2), Double-stranded RNA-binding domain (DsRBD)-containing protein (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G181400 694 / 0 AT3G03300 1548 / 0.0 dicer-like 2 (.1.2.3)
Potri.008G075900 690 / 0 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3)
Potri.018G047500 677 / 0 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3)
Potri.002G181400 327 / 2e-90 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Potri.002G226700 124 / 6e-31 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1)
Potri.011G086700 114 / 5e-27 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1)
Potri.003G179700 81 / 6e-17 AT1G80650 86 / 4e-21 RNAse THREE-like protein 1 (.1)
Potri.013G109600 62 / 3e-09 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Potri.012G045800 53 / 2e-06 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019588 1429 / 0 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2)
Lus10016367 685 / 0 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3)
Lus10036447 651 / 0 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3)
Lus10019757 645 / 0 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3)
Lus10019587 596 / 0 AT5G20320 556 / 0.0 dicer-like 4 (.1.2)
Lus10040013 357 / 4e-111 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
Lus10030177 320 / 1e-93 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10005142 328 / 1e-91 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10030176 318 / 1e-90 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
Lus10005141 175 / 9e-48 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0539 RNase_III PF00636 Ribonuclease_3 Ribonuclease III domain
CL0638 PAZ PF02170 PAZ PAZ domain
CL0196 DSRM PF14709 DND1_DSRM double strand RNA binding domain from DEAD END PROTEIN 1
Representative CDS sequence
>Potri.006G188800.2 pacid=42770397 polypeptide=Potri.006G188800.2.p locus=Potri.006G188800 ID=Potri.006G188800.2.v4.1 annot-version=v4.1
ATGTCTGGCGGTCATGTTACTGGTGAACATAGTTCTCTCTCCGTTGGTGGTACAAATGCTCGTGTTGTGTCGTCTTCGATTGTTGGTGATGGAGAGGAAT
CCGGTTCTGGACTTCAAAAGACTGAGAAAGACCCAAGAAAAATGGCAAGAAAGTATCAGTTGGAATTATGCAAGAAAGCTCTGGAAGAGAATATAATTGT
GTATTTGGGGACAGGTTGTGGCAAGACTCACATTGCTGTCCTGCTTATATACGAAATGGGTCACTTGATAAGGCAACCTCAGAAGAGTGCTTGTGTCTTC
CTTGCACCCACTGTTGCCCTTGTTCATCAGCAAGCCAAGGTTATAGAGGACTCTACTGATTTCAAGGTTGGGATCTATTGCGGAAAATCCAATCGATTGA
AGACCCACTCTAGCTGGGAAAAAGAGATTGAACAATATGAGGTTCTTGTCATGACACCTCAGATACTACTGTATAACTTAAGTCACAGCTTCATCAAGAT
GGACTTAATTGCCCTTTTGATATTTGACGAGTGTCATCATGCTCAAGTCAAAAGCGGTCATCCTTATGCACAAATCATGAAAGTCTTCTACAAAAATAAT
GATGGAAAACTTCCCCGTATCTTTGGCATGACCGCATCTCCAGTTGTGGGGAAAGGTGCTTCTAGTCGAGAAAATTTACCAAGAAGCATCAATAGTCTTG
AAAATTTACTTGATGCTAAGGTGTATTCAGTTGAAGACAAGGAAGAGTTGGAATGCTTTGTAGCATCTCCTGTAATTAGAGTATATCTGTATGGTCCTGT
TGCAAATGGCACTTCTAGCTCCTATGAGGCTTACTATAATATACTTGAGGGGGTCAAGCGCCAGTGCATAGTGGAAATTGGCAAGAAAACAGATGGAAAC
CAAAGTCTTGAAAGTCTTCGAAGCACAAAAAGAATGCTCATCAGAATGCATGAAAATATCATATTTTGTTTGGAAAATCTTGGCCTTTGGGGAGCATTGC
AGGCTTGTCGTATTCTTTTGAGTGGTGATCACTCTGAGTGGAATGCATTGATAGAAGCAGAAGGGAATACTAGTGATGTCTCCATGTGTGATAGATACCT
AAATCAAGCTACAAATGTCTTTGCCGCTGATTGTACAAGAGATGGTGTCACATCCAATGTATCACAGGTGGAGGTTTTAAAGGAGCCATTTTTCTCAAGA
AAGCTTTTACGCCTAATTGAAATTCTTTCCAACTTCAGGTTACAACCAGATATGAAATGTATAGTTTTTGTCAATAGGATTGTTACTGCAAGATCACTAT
CACACATCCTACAAAATCTGAAGTTTTTAACATCTTGGAAGTGTGATTTTCTTGTTGGGGTTCACTCTGGACTGAAGAGTATGTCACGAAAGACAATGAA
TGTCATTCTTGAGAGGTTCCGGACTGGAAAGTTGAACTTACTGCTTGCAACTAAAGTTGGTGAAGAAGGACTTGATATTCAGACATGCTGTCTTGTGATT
CGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAATCAAGGGGTCGTGCACGTATGCCTCAATCTGAATATGTTTTTTTGGTGGACAGGTGCTCTT
CTAAAGCATATCATGAGAGAGATTTGATAGAGAAATTTAAAATAGATGAAGCTCGGATGAATATTGAAATATGTGACCGTACATCGAGGGAGACATTTGA
TAGTATTGAGGAAAAAATATATAAAGTTCATGCAACTGGCGCTTCCATAACTTCTGGATTAAGCATCTCATTACTGCAGCAGTATTGTTCAAAACTCCCA
CATGATGAGTATTTCGACCCCAAGCCAAAATTCTTTTATTTTGATGATTCTGAAGGAACTGTTTGCCACATAATCTTACCCTCCAATGCTCCCACACACA
AAATAGTCGGTACACCTCAATCATCAATAGAAGTTGCTAAAAAAGATGCTTGTCTGAAAGCCATTGAACAATTGCATAAACTGGGTGCATTGAGTGAGTT
TCTTTTGCCACAACAAGAAGACACAAATGAGTTGGAGTTGGTGTCATCTGATTCAGATAACTGCGAAGACAAGGATTCACGAGGAGAACTACGTGAGATG
CTAGTTCCTGCTGTTCTGAAGGAATCGTGGACTGAATTGGAGAAGCCTATCTACCTTAACTCTTACTATATTGAATTTTGTCCTGTTCCTGAAGACAGGA
TCTATAAGCAGTTTGGTCTTTTTCTGAAGGCACCACTCCCACTCGAGGCTGATAAAATGAGTCTTGAACTTCACCTGGCTCGTGGTAGATCTGTGATGAC
AAAGCTTGTCCCATCAGGACTCTCAAAATTCAGTACAGATGAGATCACACATGCAACAAACTTTCAAGAGTTGTTTCTCAAGGCCATTCTCGATCGATCA
GAATTTGTTCATGAATATGTTCCCTTGGGAAAGGATGCATTATCTAAATCATGCCCAACCTTCTACCTATTGCTTCCTGTTATTTTTCATGTCTCTGAAA
GGAGAGTGACTGTAGATTGGGAGATTATCAGACGATGTTTATCATCTCCTGTTTTCAAGAATCCAGCCAATGCTGTGGACAAGGGAATTCTTCCTTCAAA
TGATTGCTTGCAACTTGCTAATGGCTGCAGTAGTATACGTGATGTTGAGAATAGTTTGGTGTACACTCCACACCAGAAAAAATTTTACTTCATTACTAAC
ATTGTTCCTGAAAAGAATGGTGACAGTCCATGCAAAGGTTCAAACACTCGGAGTCATAAGGATCACTTAACAACAACGTTTGGCATTCATCTTAGATATC
CAGAACAACCTCTTTTGCGTGCAAAACAACTCTTTTGTTTGCGCAACTTGCTATGCAACCGAAAGAAAGAGGATTCAGAATTGCAAGAACTGGATGAGCA
CTTTGTTGATTTGGCTCCTGAGCTTTGTGAGTTGAAGATAATAGGATTCTCTAAAGACATTGGGAGTTCTATTTCTCTACTTCCATCAGTTATGCACCGA
TTGGAAAACTTGCTTGTAGCCATTGAATTGAAATGCATATTATCTGCTTCGTTCTCTGAAGGAGATAAAGTTACCGCCCATAGAGTTTTAGAAGCTCTCA
CCACAGAGAAGTGTCAGGAACGTCTTTCTCTTGAAAGACTTGAAACTCTTGGTGATGCTTTCCTCAAATTTGCTGTCGGTCGGCATTTTTTTCTTTTGCA
TGATACCCTTGATGAAGGGGAGCTAACTAGGAAACGATCAAATGCTGTTAACAATTCCAATTTATTCAAGCTAGCAAGTAGGAACAATTTACAGGTATTT
ATTCGTGATCAACCATTTGATCCCTACCAATTTTTTGCTTTGGGTCATCCTTGCCCTAGAATTTGCACCAAGGAATCAGAAGGAACTATTCATTCTCAAT
GTGGAAGCCATGTGACTGGCCAAGCAAAGGGTAGTGAAGTCAGATGCAGCAAAGGTCACCATTGGCTACATAATAAAACAGTTTCTGATGTGGTTGAAGC
TCTCATAGGAGCATTTCTAGTTGACAGTGGCTTTAAAGCCGCAATTGCATTTCTTAGATGGATAGGTATTAAAGTGGATTTTGATGATTCACAAGTTATC
AATATTTGCCAAGCAAGCAGGACCTATGCAATGCTTAATCCTTCCATGGACCTTGCTACCCTTGAAAATTTGCTGGGGCATCAGTTCCTGTATAAAGGTC
TTCTTCTACAGGCATTTGTACATCCTTCCCACAAGAATGGAGGGGGTTGCTATCAGAGATTGGAGTTCCTTGGAGATGCTGTCTTGGATTACTTGATCAC
TTCATATCTATTTTCAGTTTATCCAAAAATGAAACCAGGTCACTTGACAGATCTGAGATCAGTGTTGGTGAACAACAGGGCCTTTGCCAGTGTAGCTGTT
GATCGATCTTTCCATGAATATCTTATCTGTGATTCCGATGCCCTTTCTGCGGCCACAAAAAAATTTGTGGACTTTGTTAGAACACCTAAATCAGAAAGGC
GTCTGCTCGAAGGACCAAAATGCCCAAAGGTTCTTGGTGATTTGGTAGAGTCTTCTGTGGGTGCCATTCTTCTTGACACGGGATTTGATTTGAACCACAT
CTGGAAGATAATGCTATCCTTCTTGAATCCAATCTCAAGCTTTTCCAATTTGCAGATAAATCCTGTGAGGGAATTAAAAGAACTTTGCCAGTCTCATAAT
TGGGACTTTGAGGTTCCTGCATCGAAGAAGGGCAGGACTTTTTCAGTTGATGTGACACTGAGTGGTAAAGATATGAACATATCTGCTTCTGCGAGCAACT
CAAATAAAAAAGAGGCTATTAGAATGGCTTCAGAAAAAATATATGCTAGGCTGAAGGATCAAGGCCTCATACCAATGACTAATTCTTTGGAGGAGGTTTT
AAGGAATAGCCAGAAGATGGAAGCCAAATTGATAGGATATGATGAGACCCCTATAGATGTAGCTCTTGATGCCCATGGGTTTGAAAACTCGAAGATACAG
GAACCTTTTGGCATCAATTGCAGCTATGAAGTGAGAGATTCTTGTCCACCCCGCTTTGAAGCTGTTGATGCTTGGTCTCTATCTCCATTAGATTTCACTG
GAGGGCAGCCCAGTGAGGCTACTGGAGATCTTAGATGTGACAGAGATGTGCTTATCACAGGTAAAGTAGACCTTGGAACAGCCAGATCTCGTTTGCGTGA
AATCTGTGCGGCTAACAGTTGGAAACCTCCTTCGTTTGAATGCTGCACTGAAGAAGGACCAAGTCACTTAAAGTCCTTCACTTACAAGGTGGTTGTGGAA
ATAGAAGAAGCACCAGAAATGAGTTTTGAATGTGTTGGGTCTCCTCAGATGAAAAAGAAAGCTGCAGCAGAGGATGCAGCAGAAGGGGCACTCTGGTACT
TGAAACATCAACGCTACTTGTCTTGA
AA sequence
>Potri.006G188800.2 pacid=42770397 polypeptide=Potri.006G188800.2.p locus=Potri.006G188800 ID=Potri.006G188800.2.v4.1 annot-version=v4.1
MSGGHVTGEHSSLSVGGTNARVVSSSIVGDGEESGSGLQKTEKDPRKMARKYQLELCKKALEENIIVYLGTGCGKTHIAVLLIYEMGHLIRQPQKSACVF
LAPTVALVHQQAKVIEDSTDFKVGIYCGKSNRLKTHSSWEKEIEQYEVLVMTPQILLYNLSHSFIKMDLIALLIFDECHHAQVKSGHPYAQIMKVFYKNN
DGKLPRIFGMTASPVVGKGASSRENLPRSINSLENLLDAKVYSVEDKEELECFVASPVIRVYLYGPVANGTSSSYEAYYNILEGVKRQCIVEIGKKTDGN
QSLESLRSTKRMLIRMHENIIFCLENLGLWGALQACRILLSGDHSEWNALIEAEGNTSDVSMCDRYLNQATNVFAADCTRDGVTSNVSQVEVLKEPFFSR
KLLRLIEILSNFRLQPDMKCIVFVNRIVTARSLSHILQNLKFLTSWKCDFLVGVHSGLKSMSRKTMNVILERFRTGKLNLLLATKVGEEGLDIQTCCLVI
RFDLPETVASFIQSRGRARMPQSEYVFLVDRCSSKAYHERDLIEKFKIDEARMNIEICDRTSRETFDSIEEKIYKVHATGASITSGLSISLLQQYCSKLP
HDEYFDPKPKFFYFDDSEGTVCHIILPSNAPTHKIVGTPQSSIEVAKKDACLKAIEQLHKLGALSEFLLPQQEDTNELELVSSDSDNCEDKDSRGELREM
LVPAVLKESWTELEKPIYLNSYYIEFCPVPEDRIYKQFGLFLKAPLPLEADKMSLELHLARGRSVMTKLVPSGLSKFSTDEITHATNFQELFLKAILDRS
EFVHEYVPLGKDALSKSCPTFYLLLPVIFHVSERRVTVDWEIIRRCLSSPVFKNPANAVDKGILPSNDCLQLANGCSSIRDVENSLVYTPHQKKFYFITN
IVPEKNGDSPCKGSNTRSHKDHLTTTFGIHLRYPEQPLLRAKQLFCLRNLLCNRKKEDSELQELDEHFVDLAPELCELKIIGFSKDIGSSISLLPSVMHR
LENLLVAIELKCILSASFSEGDKVTAHRVLEALTTEKCQERLSLERLETLGDAFLKFAVGRHFFLLHDTLDEGELTRKRSNAVNNSNLFKLASRNNLQVF
IRDQPFDPYQFFALGHPCPRICTKESEGTIHSQCGSHVTGQAKGSEVRCSKGHHWLHNKTVSDVVEALIGAFLVDSGFKAAIAFLRWIGIKVDFDDSQVI
NICQASRTYAMLNPSMDLATLENLLGHQFLYKGLLLQAFVHPSHKNGGGCYQRLEFLGDAVLDYLITSYLFSVYPKMKPGHLTDLRSVLVNNRAFASVAV
DRSFHEYLICDSDALSAATKKFVDFVRTPKSERRLLEGPKCPKVLGDLVESSVGAILLDTGFDLNHIWKIMLSFLNPISSFSNLQINPVRELKELCQSHN
WDFEVPASKKGRTFSVDVTLSGKDMNISASASNSNKKEAIRMASEKIYARLKDQGLIPMTNSLEEVLRNSQKMEAKLIGYDETPIDVALDAHGFENSKIQ
EPFGINCSYEVRDSCPPRFEAVDAWSLSPLDFTGGQPSEATGDLRCDRDVLITGKVDLGTARSRLREICAANSWKPPSFECCTEEGPSHLKSFTYKVVVE
IEEAPEMSFECVGSPQMKKKAAAEDAAEGALWYLKHQRYLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G20320 DCL4, ATDCL4 dicer-like 4 (.1.2) Potri.006G188800 0 1 DCL905
AT1G03840 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fin... Potri.007G135000 3.46 0.8852
AT3G42670 CLSY1, CLSY, CH... CLASSY 1, CLASSY1, chromatin r... Potri.008G073500 4.47 0.8577
AT5G60850 DOF OBP4, AtDof5. 4 OBF binding protein 4 (.1) Potri.004G046100 7.61 0.8633
AT1G63500 Protein kinase protein with te... Potri.003G126700 7.74 0.8544
AT1G29750 RKF1 receptor-like kinase in flower... Potri.011G072300 8.12 0.8593
AT2G27040 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PERO... Potri.016G024200 11.74 0.8105
AT5G44170 S-adenosyl-L-methionine-depend... Potri.001G148200 12.44 0.8555
AT5G10180 SULTR2;1, AST68 sulfate transporter 2;1, ARABI... Potri.007G088700 12.48 0.8182
AT4G27190 NB-ARC domain-containing disea... Potri.001G435100 13.26 0.8321
AT5G56890 Protein kinase superfamily pro... Potri.003G039100 14.42 0.8082

Potri.006G188800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.