Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51350 1059 / 0 MORE LATERAL GROWTH1 (MOL1) MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 643 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT1G08590 556 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 550 / 1e-180 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 521 / 1e-169 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 515 / 3e-167 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT1G75820 502 / 2e-162 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 499 / 3e-161 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 444 / 7e-141 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 424 / 8e-132 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113000 [exp] 1667 / 0 AT5G51350 1014 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G107600 [exp] 676 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 671 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.013G048800 [exp] 597 / 0 AT1G08590 1306 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G021700 [exp] 594 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 586 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.005G241500 [exp] 526 / 5e-172 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G073600 [exp] 522 / 3e-170 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 520 / 1e-169 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019067 [exp] 1339 / 0 AT5G51350 971 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10036321 [exp] 1329 / 0 AT5G51350 957 / 0.0 MORE LATERAL GROWTH1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10027221 [exp] 639 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10038930 [exp] 635 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10000814 [exp] 573 / 0 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10027951 [exp] 573 / 0 AT1G08590 1256 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10025943 [exp] 553 / 0 AT4G28650 1284 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10039641 [exp] 520 / 2e-168 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 505 / 4e-163 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10013562 [exp] 489 / 2e-157 AT1G75820 1297 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G189000.1 pacid=42767651 polypeptide=Potri.006G189000.1.p locus=Potri.006G189000 ID=Potri.006G189000.1.v4.1 annot-version=v4.1 ATGGAGATTTTTCATTGCTTGTACTTCAGGATTCTCTTGACCTTTACATTCATCGTAGCTGTGGTTGTGGCTACTAATCCTTATTCAGAGGCTCTCTTGA GCTTAAAATCTGAGCTCATTGATGATAGTAACAGTCTGGATGATTGGTCAGTGCCCCCCGGAGGGCAAACAGGAGAGAGAGTCCAAGCATGTTCTTGGTC TGGTGTCAGATGCAACAACAATTCCACAGTTGTTATTGCTTTAGACCTGTCTATGAAGAATCTTGGTGGTGAATTATCAGGGAAGCAATTTAGTGTCTTC ACTGAGCTTGTTGATCTCAACTTCAGCTACAACTCATTCTCAGGGCAGCTTCCTGTGGGAATCTTTAACCTCACTAATCTAAAAATCTTGGATATCAGCA GAAACAATTTTTCTGGCCAGTTTCCAGAGGGAATCTCAGGTCTTCGAAACCTGGTTGTACTTGATGCCTTCAGCAACAGCTTTTCTGGGCCGTTGCCAGT TGAAGTTTCCCAGCTTGACTATCTCAAAATTCTCAATCTGGCTGGGAGTTACTTTGATGGACCAATCCCATCAAAGTATGGTTCTTTCAAGAGCCTTGAG TTTATTCACCTGGCAGGTAACTTCCTCGGTGGTACCATACCACCAGAACTAGGCCAACTCAAGACAGTGACCCATATGGAGATTGGCTACAATTCATATG AAGGAAGTGTCCCATGGCAATTGAGTAACATGAGTGAGCTTCAGTATCTTGATATAGCTAGTGCCAATCTATCTGGCCCAATACCAAAGCAACTCTCCAA TCTCACCAAGCTTGAATCACTATTTCTCTTTAGAAACCAGCTCACTGGATCGGTCCCCTGGGAGTTTGGAAAAATTGTGCCTCTTGCAAGCTTAGATCTT TCTGATAATCATCTTTCTGGGCCTATACCTGAGAGCTTTGCAGAGTTGAAGAATCTCAAGCTGCTAAGCCTCATGTACAATGAAATGAATGGCACTGTTC CGCAAGGCATTGGTCAGCTTCCTTCGCTGGAAACTTTCCTTATATGGAACAATTTCTTCTCTGGGTCACTTCCACGGGACTTGGGCAGGAACTTAAAGCT AAAATGGGTGGATGTTTCCACCAACAATTTCATCGGCAGCATTCCACCGGATATTTGTGCCGGAGGACTAGTAAAACTGATCCTGTTTTCGAATAACTTT ACGGGCAAGCTTTCACCATCCATCTCCAATTGTTCTTCGCTTGTGCGTCTACGAATCGAAGACAATTCCTTCTCCGGTGAGATACCTCTTAAATTCAGCC AGCTTCCTGATATCACATATGTAGACCTTTCCGGGAACGAGTTTTCCGGTGGGATTCCCACAGATATCTCTCAAGCTTCCAATCTGCGGTACTTCAATAT CTCAAATAACCCAGGGCTTGGAGGTATGATCCCAGCAAAAACATGGTCTTCGCCACTTCTCCAAAATTTCTCAGCGTCAGCGTGTAATATCTCAGGCAAT CTTCCTCCATTCCACTCCTGCAAATCTGTTTCTGTTATTGAGTTACACACGAACAATCTAGCAGGAAGTGTCCCTGGAAGTGTTTCTGATTGCCAAGCTC TTAGGAAGATGGATTTAGCTTTTAATAAGTTTACTGGTCATATACCAGAAGACCTTGCAAGCCTTCCAGGTTTAAGTGTCCTAGACTTGTCACATAATAA CTTCAGTGGTCCGATACCAGCAAAGTTTGGTGCTTCTTCAAGCTTAGTGCTTCTAAACGTGTCTTTTAATGATATCTCTGGTTCCATTCCATCCAACAAC GTGTTTAGATTGATGGGTAGCAATGCTTATGAGGGAAATCCAAAGCTATGTGGAGCACCCCTGAAACCATGTTCTGCTTCGATCGCAATATTCGGCGGCA AGGGCACAAGAAAGCTTACATGGGTTCTGCTACTCTGTGCAGGGTTGGTTGTATTAATTGTGGCATCAATCTTGGGGATATTCTATATCCGGAGAGGAAG TAAAGGTCAATGGAAAATGGTCTCCTTCAGTGGACTCCCCCGATTCACAGCAAATGATGTTTTGAGAAGCTTTAGTTCCACGGAATCAATGGAAGCAGTG CCAGCAGAATCTAGTTCAGTTTGCAAAGCCGTGCTGCCTACAGGAATAACAGTTTCGGTGAAAAAGATTGAACTGGAAACAAAGAGAATGAAGAAAGCCA CAGAATTTATGACACGACTAGGTGTTGCAAGACACAAGAATTTGATTAGATTGCTAGGATTTTGCTACAACAAGCAACTAGCTTATGTCTTGCATGATTA TCAGCCTAATGGTAACTTGGCTGAAAAAATCAGCTTGAAGAGAGATTGGATGGCCAAGTACAAACTCGTCATTGGCATTGCTAGGGGACTGTGCTTCCTT CACCATGACTGTTACCCAGCAATTCCTCATGGAGATTTGAAGTTGAGTAACATATTGTTTGATGAAAATATGGAGCCTCATTTGGCTGAATTTGGGTTCA AGTACCTTGTGGAAATGACTAAAGGCTCGTCTCCTGCAACAATTTCCATGAGAGAAACAGGCGAACTCAACAGTGCCATAAAAGAGGAGCTCTGCATGGA CACATACAAATTTGGGGAGATCGTTCTGGAAATCCTGACTAATGGCAGATTGGCAAATGCAGGAGGGAGTATACAGAGCAAGCCTAAGGAGGTGCTTCTA AGAGAAATATACAGCGCGAATCAAACTGGTTCTGCTGATGCAATGCAAGAGGAAATAAAACTGGTTTTTGAAGTTGCTTTGCTCTGCATGAGAAGTAGGC CATCTGATCGACCATCCATGGAAGATGCACTGAAACTTCTATCAGGGGTGAAGTCGGAAGTAAATTAA
AA sequence Show only first row Show all	>Potri.006G189000.1 pacid=42767651 polypeptide=Potri.006G189000.1.p locus=Potri.006G189000 ID=Potri.006G189000.1.v4.1 annot-version=v4.1 MEIFHCLYFRILLTFTFIVAVVVATNPYSEALLSLKSELIDDSNSLDDWSVPPGGQTGERVQACSWSGVRCNNNSTVVIALDLSMKNLGGELSGKQFSVF TELVDLNFSYNSFSGQLPVGIFNLTNLKILDISRNNFSGQFPEGISGLRNLVVLDAFSNSFSGPLPVEVSQLDYLKILNLAGSYFDGPIPSKYGSFKSLE FIHLAGNFLGGTIPPELGQLKTVTHMEIGYNSYEGSVPWQLSNMSELQYLDIASANLSGPIPKQLSNLTKLESLFLFRNQLTGSVPWEFGKIVPLASLDL SDNHLSGPIPESFAELKNLKLLSLMYNEMNGTVPQGIGQLPSLETFLIWNNFFSGSLPRDLGRNLKLKWVDVSTNNFIGSIPPDICAGGLVKLILFSNNF TGKLSPSISNCSSLVRLRIEDNSFSGEIPLKFSQLPDITYVDLSGNEFSGGIPTDISQASNLRYFNISNNPGLGGMIPAKTWSSPLLQNFSASACNISGN LPPFHSCKSVSVIELHTNNLAGSVPGSVSDCQALRKMDLAFNKFTGHIPEDLASLPGLSVLDLSHNNFSGPIPAKFGASSSLVLLNVSFNDISGSIPSNN VFRLMGSNAYEGNPKLCGAPLKPCSASIAIFGGKGTRKLTWVLLLCAGLVVLIVASILGIFYIRRGSKGQWKMVSFSGLPRFTANDVLRSFSSTESMEAV PAESSSVCKAVLPTGITVSVKKIELETKRMKKATEFMTRLGVARHKNLIRLLGFCYNKQLAYVLHDYQPNGNLAEKISLKRDWMAKYKLVIGIARGLCFL HHDCYPAIPHGDLKLSNILFDENMEPHLAEFGFKYLVEMTKGSSPATISMRETGELNSAIKEELCMDTYKFGEIVLEILTNGRLANAGGSIQSKPKEVLL REIYSANQTGSADAMQEEIKLVFEVALLCMRSRPSDRPSMEDALKLLSGVKSEVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51350		MORE LATERAL GR...	MORE LATERAL GROWTH1, Leucine-...		Potri.006G189000 [exp]	0	1
AT1G21740			Protein of unknown function (D...		Potri.005G108400 [exp]	8.94	0.7044
AT5G67620			unknown protein		Potri.007G005600 [exp]	11.40	0.7069
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	12.72	0.6719
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.008G155400 [exp]	16.91	0.6650	RHEL901,SDE3.1
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Potri.006G144900 [exp]	16.94	0.6744
AT1G75430	HD	BLH11	BEL1-like homeodomain 11 (.1)		Potri.002G030900 [exp]	20.78	0.6827
AT5G13290		SOL2, CRN	SUPPRESSOR OF LLP1 2, CORYNE, ...		Potri.003G163300 [exp]	20.88	0.6933
AT3G20898			unknown protein		Potri.009G053000 [exp]	20.92	0.6944
AT4G16490			ARM repeat superfamily protein...		Potri.016G010800 [exp]	22.49	0.6469
AT5G41620			unknown protein		Potri.003G135000 [exp]	26.55	0.6610

Compare expression of checked genes

Potri.006G189000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.