Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	STA.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02050 820 / 0 STP7 sugar transporter protein 7 (.1) AT5G26340 587 / 0 ATSTP13, MSS1, STP13 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) AT1G77210 586 / 0 AtSTP14 sugar transport protein 14, sugar transporter 14 (.1.2) AT3G19940 544 / 0 Major facilitator superfamily protein (.1) AT1G11260 531 / 0 ATSTP1, STP1 sugar transporter 1 (.1) AT1G50310 528 / 0 ATSTP9 sugar transporter 9 (.1) AT3G19930 519 / 0 ATSTP4, STP4 sugar transporter 4 (.1) AT5G23270 518 / 0 ATSTP11, STP11 sugar transporter 11 (.1) AT4G21480 515 / 5e-180 STP12 sugar transporter protein 12 (.1) AT3G05960 512 / 9e-179 ATSTP6 sugar transporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113300 [exp] 894 / 0 AT4G02050 821 / 0.0 sugar transporter protein 7 (.1) Potri.001G253800 [exp] 583 / 0 AT1G77210 737 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.018G085200 [exp] 578 / 0 AT1G77210 771 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Potri.008G151100 [exp] 564 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.010G089800 [exp] 562 / 0 AT5G26340 836 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Potri.007G073900 [exp] 558 / 0 AT3G19940 706 / 0.0 Major facilitator superfamily protein (.1) Potri.007G072800 [exp] 553 / 0 AT3G19940 672 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073800 [exp] 550 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1) Potri.007G073850 [exp] 550 / 0 AT3G19940 699 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036325 [exp] 740 / 0 AT4G02050 801 / 0.0 sugar transporter protein 7 (.1) Lus10010534 [exp] 583 / 0 AT5G26340 902 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10002450 [exp] 581 / 0 AT5G26340 905 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10022421 [exp] 570 / 0 AT1G77210 790 / 0.0 sugar transport protein 14, sugar transporter 14 (.1.2) Lus10021924 [exp] 568 / 0 AT5G26340 832 / 0.0 SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1) Lus10013441 [exp] 563 / 0 AT1G50310 731 / 0.0 sugar transporter 9 (.1) Lus10018422 [exp] 525 / 0 AT1G11260 835 / 0.0 sugar transporter 1 (.1) Lus10019070 [exp] 524 / 0 AT4G02050 538 / 0.0 sugar transporter protein 7 (.1) Lus10009656 [exp] 512 / 1e-178 AT5G61520 608 / 0.0 Major facilitator superfamily protein (.1.2) Lus10002597 [exp] 509 / 5e-178 AT1G11260 798 / 0.0 sugar transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.006G189100.2 pacid=42767768 polypeptide=Potri.006G189100.2.p locus=Potri.006G189100 ID=Potri.006G189100.2.v4.1 annot-version=v4.1 ATGGCAGGAGGGTCTATTGGGCCGGCTGGTGTGGCCAAGGAGAGGGCAGAGCAGTATCAAGGGAGAGTCACCTGTTCTGTAATCATTGCATGTGTTATTG CTGCTGTTGGTGGCTCTCTCTTTGGCTATGATATTGGGATTTCAGGAGGAGTGACATCAATGGATGGATTTCTTAAGAAATTTTTCCATGGTGTATATGA AAAGAAGCAGCGTGCTCATGAAAACAACTACTGCAAGTACAATGACCAAGGGCTATCAGCCTTTACCTCTTCTCTCTACCTTGCTGGTTTGGTTTCATCT CTGGTTGCAAGTCCTATCACAAGAATTTATGGACGTCGAATAAGTATAATCTGTGGTGGTTCCAGCTTTCTTATTGGAGCAATCTTAAATGCCACATCCA TCAACCTGGCAATGCTTCTCATGGGTCGGATCATGCTTGGTGTCGGCATTGGATTTGGAAATCAGGCTGTTCCACTATACTTATCAGAGATGGCACCAAC TCATCTCAGAGGAGCACTAAACATGATGTTTCAGTTAGCAACTACCAGTGGAGTCTTCACGGCAAACATGGTTAATTATGGAACACAAAAGCTTAAGCCA TGGGGATGGAGACTCTCTCTAGGCCTAGCAGCATTTCCAGCTATATTGATGACTGTGGGAGGGATATATCTGTCTGAGACACCTAATAGTTTAATCGAAC GGGGAATGCGAGATAAAGGAAGAAAAGTCCTAGAGAAAATCAGAGGAACCAAAAATGTTGATGCAGAATTTGACGACATGGTTGATGCAAGTGAGTTGGC TAACTCAATCAAGCATCCATTCAGAAACATCCTTATAAAAAGGAACAGGCCTCAATTGGTTATGGCAATCCTGCTACCAGCATTTCAGATTCTGACAGGA ATAAATTCTATTCTCTTCTATGCTCCAGTGCTGTTTCAAAGTATGGGATTTGGGCGCAATGCTTCCCTCTACTCCTCAGCTGTGACTGGAGCAGCTCTTT GTTCCTCTACCTTTATTGCTATCGCAACAGTCGATAGACTGGGCCGGAGATTTTTACTTATCAGTGGTGGAATACAAATGATAACATGCCAGGTAATTGT TTCTATAATCTTGGGGGTGAAGTTCGGGGACAACCAGAAACTATCTAAAGTCTTCTCGGTGTTGGTTGTCATTGTGATTTGCTTGTTTGTTGTAGCCTTT GGATGGTCATGGGGTGGGCTTGGCTGGACCATTCCAAGCGAGATATTTCCACTGGAAACCCGATCAGCTGGACAAAGCATTACAGTAGCTGTAAATCTTT TATTTACTTTTGTAATAGCTCAGGTTTTCCTATCCCTCCTCTGTGCATTCAAGTTCGGAATCTTCCTCTTCTTTGCTAGCTGGATTCTTGTCATGACTAT TTTCGTTTACTTCTTCCTCCCTGAAACTAAGGGAGTTCCTATCGAAGAGATGATATTCCTATGGAGAAAGCATTGGTTTTGGAAGAAGATAGTGCCTGGG AATCCAAATGATGACACTCAATACGAGGAAGGGAAAGGCGTCGGGCCTAATTCAATTTGA
AA sequence Show only first row Show all	>Potri.006G189100.2 pacid=42767768 polypeptide=Potri.006G189100.2.p locus=Potri.006G189100 ID=Potri.006G189100.2.v4.1 annot-version=v4.1 MAGGSIGPAGVAKERAEQYQGRVTCSVIIACVIAAVGGSLFGYDIGISGGVTSMDGFLKKFFHGVYEKKQRAHENNYCKYNDQGLSAFTSSLYLAGLVSS LVASPITRIYGRRISIICGGSSFLIGAILNATSINLAMLLMGRIMLGVGIGFGNQAVPLYLSEMAPTHLRGALNMMFQLATTSGVFTANMVNYGTQKLKP WGWRLSLGLAAFPAILMTVGGIYLSETPNSLIERGMRDKGRKVLEKIRGTKNVDAEFDDMVDASELANSIKHPFRNILIKRNRPQLVMAILLPAFQILTG INSILFYAPVLFQSMGFGRNASLYSSAVTGAALCSSTFIAIATVDRLGRRFLLISGGIQMITCQVIVSIILGVKFGDNQKLSKVFSVLVVIVICLFVVAF GWSWGGLGWTIPSEIFPLETRSAGQSITVAVNLLFTFVIAQVFLSLLCAFKFGIFLFFASWILVMTIFVYFFLPETKGVPIEEMIFLWRKHWFWKKIVPG NPNDDTQYEEGKGVGPNSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.006G189100 [exp]	0	1	STA.1
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	3.74	0.8487
AT1G10970		ATZIP4, ZIP4	zinc transporter 4 precursor (...		Potri.018G053300 [exp]	5.29	0.7908
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.016G047600 [exp]	7.34	0.7804
AT1G17820			Putative integral membrane pro...		Potri.017G155000 [exp]	12.68	0.8107
AT1G32690			unknown protein		Potri.001G141600 [exp]	20.09	0.8330
AT1G04790			RING/U-box superfamily protein...		Potri.003G176500 [exp]	20.56	0.7573
AT2G13840			Polymerase/histidinol phosphat...		Potri.001G206400 [exp]	22.02	0.8238
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	23.08	0.7930
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G118800 [exp]	25.92	0.7839
AT3G13780			SMAD/FHA domain-containing pro...		Potri.001G196700 [exp]	26.40	0.7826

Compare expression of checked genes

Potri.006G189100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.