Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35160 1123 / 0 Endomembrane protein 70 protein family (.1.2) AT4G12650 867 / 0 Endomembrane protein 70 protein family (.1) AT2G24170 535 / 0 Endomembrane protein 70 protein family (.1) AT3G13772 533 / 0 AtTMN7 transmembrane nine 7 (.1) AT5G10840 528 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 526 / 2e-180 Endomembrane protein 70 protein family (.1.2) AT1G55130 520 / 1e-177 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT1G14670 261 / 2e-78 Endomembrane protein 70 protein family (.1) AT1G08350 253 / 1e-75 Endomembrane protein 70 protein family (.1.2) AT2G01970 248 / 9e-74 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G113500 [exp] 1259 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 866 / 0 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 858 / 0 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G018400 [exp] 547 / 0 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 537 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G184200 [exp] 535 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G264500 [exp] 530 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 530 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 250 / 2e-74 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027831 [exp] 1135 / 0 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 1128 / 0 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 880 / 0 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 755 / 0 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10042415 [exp] 533 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 531 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10026254 [exp] 531 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10000222 [exp] 529 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10037643 [exp] 529 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10031876 [exp] 234 / 3e-68 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.006G189300.1 pacid=42767042 polypeptide=Potri.006G189300.1.p locus=Potri.006G189300 ID=Potri.006G189300.1.v4.1 annot-version=v4.1 ATGGACTTTTTTGCTCATTTTAAGATCTGGGTCTTGACCCTTTGTTTGGTTTTCCAATCTGGATATGGGTTTTACCTTCCTGGTAGTTACCCTCACAATT ATGGCATTGGTGATACTTTATCAGTGAAAGTGAATTCAATCACTTCTATTGAGACTGAGATTCCTTTTAGCTATTATAGTTTGCCTTTCTGTAAGCCTTT AGAGGGTGTTAAAGATAGTGCTGAAAACCTTGGTGAGGTTCTTATGGGCGATAGGATTGAAAACTCACCTTATAAGTTTAAGATGCATACCAATGAGACC GATATCTTTCTGTGTCGAACCGATCCTTTGTCGGGTGATCACTTTAAGCTTCTAAAGAAGAGGATTGATGAGATGTATCAGGTTAACTTGATTCTAGATA ATTTGCCTGCGATAAGGTATGCTAAGAAGGAGTCTTATTTTTTGAGGTGGACGGGATATCCATTGGGGATTAAGGTTAAGGATGCTTATTATGTGTTTAA TCATTTGAAGTTTACTGTACTTGTTCATAAGTACGAGGAGGCCAATGTAGCACGTGTGATGGGAACTGGAGATGGGTCGGAATTGATTCCTACTGTTGGG AGTGGGGGATCAGAACTTCCTGGGTATATGGTTGTGGGTTTTGAGGTGGTTCCTTGTAGTGTCATGCATGATGCTCAGTCTGTTAAGAACTTGAAACCCT ATGAGAAATACCCCTCTCCTATTAAGTGTGATCCCACCACTGTGGCAATGCTGGTTAAGGAGAATGAGCCAATTGTTTTCACTTATGAGGTTACATTTGA GGAGAGTGATATCAAGTGGCCATCGAGATGGGATGCTTATTTGAAGATGGAGGGGTCCAAGGTCCATTGGTTCTCTATCTTGAATTCTCTGATGGTGATC ACTTTCCTTGCTGGTATTGTCCTGGTCATCTTCTTGAGGACTGTCAGGCGGGATCTGACCCGTTATGAGGAACTTGACAAGGAAGCTCAAGCACAGATGA ATGAGGAGTTATCTGGGTGGAAGCTTGTTGTGGGTGATGTTTTCCGTGCTCCAACTAATTCTGGGCTATTGTGTGTTATGGTTGGAGATGGGGTTCAGAT TCTTGGGATGGCAGTTGTGACAGTAATGTTTGCTGCCCTTGGATTCATGTCTCCAGCTTCCCGTGGAACTCTGATTATAGGCATGCTAATTTTCTACATG ATTCTTGGTATTGCAGCTGGCTATGTTGCAGTTCGCCTTTGGAGGACAATTGGCTGTGGTGATAAGAAGGGATGGGTTTCAGTTTCTTGGAAGGTTGCCT GCTGCTTCCCTGGCATTGCCTTTTTTATTTTAACCACTTTGAATTTTCTATTATGGGGTAGCCATAGCACAGGTGCCATTCCATTCTCTTTGTTTGTTGT TCTGATTTTCATGTGGTTCTGCATCTCGGTTCCTCTTACCCTAGTTGGGGGCTACTTTGGGGCAAAGGCACCACATATTGAATACCCTGTTCGAACCAAC CAGATTCCTCGGGAAATCCCAGCTCAAAAATATCCATCTTGGCTACTGGTCTTTGGAGCTGGAACTCTTCCTTTTGGCACACTCTTCATTGAGCTCTTCT TTATCATGTCTAGTATCTGGATGGGCCGTGTTTACTATGTTTTCGGGTTTCTCTTGATTGTTTTCATCCTTCTTGTGGTGGTTTGTGCTGAAGTATCTCT TGTCTTAACCTACATGCATCTCTGTGTGGAGGACTGGAAATGGTGGTGGAAATCCTTCTTTGCTTCTGGTTCAGTTGCTATCTACATTTTCCTGTACTCT GTAAACTATCTCATATTTGAGCTTAAGAGTTTGAGTGGCCCTGTCTCGGAAGCACTTTACCTTGGGTACTCCCTCTTGATGGCTTTGGCAATTATGTTTG CAATGGGCTCAGTTGGGTTCCTATCATCTTTCTGGTTTGTGCACTACTTGTTCTCTTCAGTGAAGTTGGATTGA
AA sequence Show only first row Show all	>Potri.006G189300.1 pacid=42767042 polypeptide=Potri.006G189300.1.p locus=Potri.006G189300 ID=Potri.006G189300.1.v4.1 annot-version=v4.1 MDFFAHFKIWVLTLCLVFQSGYGFYLPGSYPHNYGIGDTLSVKVNSITSIETEIPFSYYSLPFCKPLEGVKDSAENLGEVLMGDRIENSPYKFKMHTNET DIFLCRTDPLSGDHFKLLKKRIDEMYQVNLILDNLPAIRYAKKESYFLRWTGYPLGIKVKDAYYVFNHLKFTVLVHKYEEANVARVMGTGDGSELIPTVG SGGSELPGYMVVGFEVVPCSVMHDAQSVKNLKPYEKYPSPIKCDPTTVAMLVKENEPIVFTYEVTFEESDIKWPSRWDAYLKMEGSKVHWFSILNSLMVI TFLAGIVLVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFRAPTNSGLLCVMVGDGVQILGMAVVTVMFAALGFMSPASRGTLIIGMLIFYM ILGIAAGYVAVRLWRTIGCGDKKGWVSVSWKVACCFPGIAFFILTTLNFLLWGSHSTGAIPFSLFVVLIFMWFCISVPLTLVGGYFGAKAPHIEYPVRTN QIPREIPAQKYPSWLLVFGAGTLPFGTLFIELFFIMSSIWMGRVYYVFGFLLIVFILLVVVCAEVSLVLTYMHLCVEDWKWWWKSFFASGSVAIYIFLYS VNYLIFELKSLSGPVSEALYLGYSLLMALAIMFAMGSVGFLSSFWFVHYLFSSVKLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G35160			Endomembrane protein 70 protei...		Potri.006G189300 [exp]	0	1
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	1.00	0.9620
AT4G12650			Endomembrane protein 70 protei...		Potri.014G172200 [exp]	2.00	0.9518
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Potri.001G120900 [exp]	5.29	0.9092	Pt-KAS.2
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Potri.001G190400 [exp]	6.70	0.9422
AT5G18520			Lung seven transmembrane recep...		Potri.016G081300 [exp]	13.49	0.9243
AT5G35160			Endomembrane protein 70 protei...		Potri.018G113500 [exp]	13.74	0.9100
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Potri.018G063500 [exp]	14.14	0.9248	PtrSuSY1,Pt-SUS1.2
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.017G029000 [exp]	15.29	0.9203
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	16.12	0.9279
AT3G05520			Subunits of heterodimeric acti...		Potri.013G017000 [exp]	17.00	0.9178

Compare expression of checked genes

Potri.006G189300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.